Table S1 List of differentially expressed proteins in Δstk
Accession Description Fold change P-value
D5AFG6 DNA-directed RNA polymerase subunit beta 0.5490901 0.0002394 D5AJV4 Translation initiation factor IF-2 0.5930101 8.809E-06 A0A116MPN5 Putative oligopeptide-binding protein, OppA 0.260904 0
A0A0Z8I535 GMP synthase 0.5727787 0.0094332
U5UF92 DNA-directed RNA polymerase subunit alpha 0.5432221 0.0053335 G7SK61 Putative glutamine ABC transporter,
glutamine-binding protein/permease protein 0.4124075 2.959E-05
A0A116LNF0 Asparagine--tRNA ligase 0.6362686 0.0186512
D5AIQ2 Cation transporting ATPase 0.5679228 0.0001723
Q9AIW1 Glutamate dehydrogenase 0.3609139 4.906E-08
D5AKD0 Glutamate--tRNA ligase 0.6659878 0.0326007
A0A0H3MXU4 Anaerobic ribonucleoside-triphosphate
reductase 0.2624537 5.792E-10
D5AF22 tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG 0.5779402 0.0126828
D5AGP0 Glutamine--fructose-6-phosphate
aminotransferase 0.2376141 8.344E-08
D5AG66 Glycosyl transferase, family 51 0.5323612 0.0005361 D5AHG9 Peptide chain release factor 1 0.6542104 0.0287836 A0A0H3MXX6 Putative fumarate reductase flavoprotein
subunit 0.2283907 5.464E-06
U5UC77 Glutamine synthetase 0.3182886 1.098E-05
D5AHL4 DNA topoisomerase 1 0.6528808 0.0003723
U5UKJ5 Ketol-acid reductoisomerase (NADP(+)) 0.5986005 6.38E-05 A5JSI6 Cell wall hydrolase/autolysin 0.500737 0.0005338
D5AJX7 FeS assembly protein SufB 0.4952519 0.0007317
U5UHR8 Sugar ABC transporter substrate-binding
protein 0.4416663 0.0123381
G7SJD5 Basic membrane lipoprotein 0.3076762 1.621E-05
D5AJP4 Mannose-specific EIIAB Phosphotransferase
system 0.3520708 9.777E-05
A0A0H3MYM8 Streptococcal histidine triad-family protein 0.5852909 0.0020781
U5UIY6 Sialic acid synthase 0.3632837 0.00013
U5UJJ2 Amino acid ABC transporter, amino acid-
binding protein 0.2462543 2.072E-08
A0A116KUT0 30S ribosomal protein S3 0.2481996 1.228E-05
A4VSV9 Glycosidase 0.5050864 0.0006987
U5UC21 30S ribosomal protein S8 0.2351972 2.771E-05
U5UFL8 Cps2H 0.5943439 0.0057201
D5AHC7 Homoserine dehydrogenase 0.608379 0.0016522
U5UF65 50S ribosomal protein L3 0.237444 1.198E-05
U5UKP6 Lipoprotein 0.4671598 3.224E-05 A0A0N0DMG4 S-adenosylmethionine synthase 0.5548203 0.0102318 R9RJ65 Eukaryotic-type serine/threonine kinase 0.0420327 1.71E-10 D5AFF8 Zinc ABC transporter, zinc-binding lipoprotein 0.3120084 2.296E-06
G7SJX4 Uncharacterized protein 0.6272523 0.0366488
A0A0Z8V2Y3 Aspartokinase 0.5867332 0.0012887
D5AEU0 Putative amino acid ABC transporter, ATP-
binding protein 0.651609 0.0284189
U5UC30 30S ribosomal protein S13 0.2570921 0.0001144
U5UGC9 UDP-N-acetylglucosamine 2-epimerase 0.5612243 0.045202
G7SMM0 Ribosome-recycling factor 0.553913 0.0001041
A0A0K2E4M4 Branched-chain amino acid ABC transporter
substrate-binding protein 0.6263624 0.0036225
U5UF76 50S ribosomal protein L14 0.2693799 2.613E-05
D5AEX1 Cell wall surface anchor family protein 0.2002953 0.0003306
U5UFQ7 Adenylate kinase 0.4333582 9.739E-05
A4VXA0 Glutamine amidotransferase, class I 0.2905769 2.601E-05 D5AHC4 Putative ABC transporter, ATP-binding protein 0.57312 0.0081273 A0A0H3MWC3 Putative ferrichrome-binding protein 0.3718117 7.414E-05 A0A116LQH7 ABC transporter ATP-binding protein 0.6416894 0.014054
U5UGE0 Glycosyltransferase 0.6553018 0.0347901
G7SGW9 Deoxyribose-phosphate aldolase 0.6339315 0.0099664
D5AJ13 Putative 5'-nucleotidase 0.3418261 1.383E-06
A0A0Z8GRV4 30S ribosomal protein S7 0.297216 0.0009376
A0A0Z8K531 Aspartate-semialdehyde dehydrogenase 0.5972903 0.0068638
U5UKD0 30S ribosomal protein S6 0.2206902 0.0001113
D5AF69 ChaP 0.5300603 0.0009958
D5AFC8 50S ribosomal protein L24 0.1468604 0.0003207
G7SP72 Transcriptional regulator 0.4912805 0.0324263
G7SLK4 50S ribosomal protein L22 0.2181957 0.0020862
A0A0Z8LWI2 Type I site-specific restriction-modification system, R (Restriction) subunit and related
helicase (hsdR) 0.623129 0.0183101
G7SJM1 Uncharacterized protein 0.4580858 0.0014657
U5UCQ9 50S ribosomal protein L19 0.1759141 9.621E-05
A0A0Z8C892 Dihydropteroate synthase 0.6520267 0.0495451
U5ULT3 50S ribosomal protein L9 0.3960394 0.0002053
U5UGX3 30S ribosomal protein S18 0.6021575 0.0090162
D5AFC1 30S ribosomal protein S19 0.2730748 0.0005612
A0A0Z8JHW7 Phosphotransferase system IIC component,
glucose/maltose/N-acetylglucosamine-specific 0.5300781 0.022709
A0A116PGF8 ABC transporter ATPase 0.6242894 0.0016979
U5UCU6 30S ribosomal protein S17 0.2422639 0.0017337
G7SLG0 Transcription elongation factor GreA 0.3651293 0.0025012
D5AHN1 Orotate phosphoribosyltransferase 0.4820171 0.0042136
G7SNZ7 50S ribosomal protein L13 0.2653484 0.0040796
G7SIP7 Transcription termination/antitermination
protein NusG 0.5396196 0.0376755
D5AIA1 ABC transporter, ATP binding protein 0.6194478 0.0118608 A0A123TNJ0 Probable transcriptional regulatory protein
yebC 0.3225879 0.0015531
U5UI12 30S ribosomal protein S9 0.4074778 0.0001523
A0A0H3MW10 Putative Mac family protein 0.3892814 2.942E-05
Q5VLQ9 Putative ABC transporter 0.2891151 0.0020169
U5UCV8 30S ribosomal protein S11 0.2975225 0.0265704
G5L2B4 ABC-type multidrug transport system, ATPase
and permease component 0.4892995 0.0068807
A4VTU1 Cps2A 0.4869373 0.0390005
G7SLU7 Glutamine ABC transporter substrate-binding
protein 0.150924 0.0011983
D5AJV3 Ribosome-binding factor A 0.5258536 0.0040827
U5UGQ1 Major membrane immunogen, membrane-
anchored lipoprotein 0.3738372 2.917E-06
U5UJ31 Adenosine deaminase 0.2121406 2.749E-05
D5AEV7 High-affinity zinc uptake system protein znuA 0.3953344 0.0033781
D5AF19 Replicative DNA helicase 0.6637039 0.0190254
U5UGP4 Uncharacterized protein 0.6469067 0.0376455
D5AJY1 FeS assembly protein SufD 0.5539037 0.0265938
U5UIS6 30S ribosomal protein S16 0.1346782 0.0004022
G7SLU8 ABC-type polar amino acid transport system,
ATPase component 0.2701461 1.365E-05
D5AH23 Formate--tetrahydrofolate ligase 0.538794 0.0030572 A0A0N0DQE3 Mannose-specific PTS IID 0.3786954 0.0061454
U5UC17 50S ribosomal protein L29 0.2568763 0.0008228
Q9X4U6 Chain length determinant
protein/polysaccharide export protein, cps2B 0.5196101 0.0295358 A0A116M3A8 Trypsin-like serine protease, htrA 0.6110816 0.0303447
D5AJM4 NADH dehydrogenase 0.5848161 0.0128247
A0A123SYN8 Phosphotransferase family protein 0.5796788 0.0066352 A0A0K2E4Y0 Translation initiation factor IF-3,infC 0.5831232 0.0006908
G7SJY8 Cell cycle protein GpsB 0.3125086 0.0065513
U5UFQ4 50S ribosomal protein L18 0.3552057 0.0031187
G5L0S6 30S ribosomal protein S15 0.3523914 0.0159549
U5UFP5 50S ribosomal protein L33 0.2082915 0.0010979
U5UEH8 ABC transporter permease protein 0.2020373 0.000877
U5UI26 Uncharacterized protein 0.5369483 0.0177279
U5UCQ3 Ribosomal silencing factor RsfS 0.6098834 0.0198185 D5AIL5 Glucose-6-phosphate isomerase 0.3997848 0.0300247
A4VVT3 Uncharacterized protein 0.2815363 0.0050042
U5UEM9 Phosphocarrier protein HPr 0.3492422 0.0024466
A0A0Z8ER95 Translation initiation factor 1 0.3581497 0.0005401
U5UBY3 50S ribosomal protein L16 0.4185553 0.0020911
B3GFZ7 Extracellular factor protein (Fragment) 0.2983263 0.0059207 D5AFJ8 Transcriptional regulator, glutamine synthetase
repressor 0.2890887 0.0219527
G5KZ68 50S ribosomal protein L27 0.174395 0.0002352
D5AGX2 Uncharacterized protein 0.2280664 0.033875
A0A0M9FIU4 Cation transport ATPase 0.211174 0.0004152
D5AII5 Glyoxalase/bleomycin resistance
protein/dioxygenase 0.3142942 0.0086231
A0A123TR75 Inosine-5'-monophosphatedehydrogenase ,
impdh 0.6119501 0.031397
A0A160JPX9 30S ribosomal protein S20 0.2457213 0.0413058 G7SH09 Amino acid ABC transporter periplasmic
protein 0.4681827 0.0125487
U5UG04 Isoleucyl-tRNA synthetase, putative 0.3822404 0.0006047 D5AEY4 GCN5-related N-acetyltransferase 0.545919 0.0252011
A4VVZ4 Uncharacterized protein 0.6090744 0.0158629
U5UCM1 50S ribosomal protein L28 0.2873077 0.0032011
G7SMQ5 Muramidase (Flagellum-specific) 0.5615803 0.049877 G7SK43 Sugar metabolism transcriptional regulator 0.5737949 0.0483964 U5UJ32 Multidrug ABC transporter ATPase 0.3992752 0.0454121
U5UDX1 DNA repair ATPase 0.6277826 0.0297081
U5UF16 Ribosome-associated heat shock protein
implicated in the recycling of the 50S subunit 0.6175239 0.0303114 A0A0Z8Y8J2 Phosphoribosylamine--glycine ligase 0.441863 0.0345573
G7SFL8 Mannonate dehydratase 0.5236117 0.0184847
D5AI52 Aconitate hydratase 0.6495672 0.0492683
U5UEE1 Glucose-1-phosphate thymidylyltransferase 1.5484823 0.04489274
A0A0Z8HRX2 DNA repair protein RecN 1.917848 0.01942772
A0A0H3MVS2
UDP-N-acetylmuramoyl-L-alanyl-D-
glutamate--L-lysine ligase 1.7655175 0.03659489
U5UDP7 Uncharacterized protein 3.237645 8.83922E-07
A0A116NL00 Thioredoxin reductase, trxB 1.5870255 0.003798859 A0A0Z8MKD7 DNA polymerase III subunits gamma and tau 1.8514158 0.0258779 A0A123SUF3
S-adenosylmethionine:tRNA
ribosyltransferase-isomerase 1.8537694 0.02730717 D5AFI5 Phenylalanyl-tRNA synthetase-like protein 1.7142354 0.033990972
D5AIR2 UDP-glucose 4-epimerase 1.7497194 0.030800531
U5UGX7 Cytidylate kinase ,cmk 1.6509531 0.022809859
A0A0Z8QJU8 Non-canonical purine NTP pyrophosphatase 1.6506669 0.035158422 U5UG34 Phosphopantothenoylcysteine decarboxylase 2.1541494 0.000452606
U5UD68 Small-conductance mechanosensitive channel 1.6073879 0.01354421 D5AIS8 Type I restriction enzyme EcoEI M protein 1.5225222 0.005355971 D5AIW8 Tetratricopeptide repeat family protein 1.5605915 0.0141768
U5UE19 ABC transporter 1.5740543 0.01642615
A0A116KBQ0 Dehydrogenase and related proteins 2.4291271 0.000909265
D5AGW4 ArcT 1.5896418 0.026682369
G7SNQ1 ATP synthase subunit b 1.9363525 0.01046527
G7SGL7 Putative protease 1.631779 0.002280322
A0A0Z8FLR7 Dihydroorotase ,pyrC 2.2753905 0.01061619
G7SJD2 Pyrimidine-nucleoside phosphorylase 2.0642261 0.002021482 A0A116KXV7 Glutamine amidotransferase 2.3032418 0.041020371 U5UHN7 ATP synthase subunit delta, atpH 1.7164064 0.03684631 A0A116M090
Holliday junction ATP-dependent DNA
helicase RuvB 1.7496919 0.03333253
U5UH19 Uncharacterized protein 3.1413322 3.15655E-05
G7SK03 Sensor histidine kinase 1.6454012 0.002504769
D5AIA5 Tagatose 1,6-diphosphate aldolase 1.6505953 0.006543686
A0A0N0DLY9 ATPase 3.4395097 7.37832E-05
D5AIL1 Peptidase M24 1.7917257 0.002553939
U5UGG4 Collagenase-like protease 1.5127468 0.019796031
G7SKZ8 Peptide ABC transporter permease 1.6634352 0.0124507 A0A168YWM4 LysR family transcriptional regulator 1.5974098 0.023970351
G7SLU0 Glycosyltransferase 1.8532377 0.000973199
G7SJK2 Cystathionine gamma-synthase 1.7041389 0.01067416
U5UET1 Thymidylate synthase 1.5402547 0.02311404
U5UEN0 Uncharacterized protein 1.6310835 0.001579916
A4VWB3
Predicted sugar phosphatases of the HAD
superfamily 2.4358285 0.008287761
D5AHF0 4-hydroxy-tetrahydrodipicolinate reductase 1.8042092 0.017543331 D5AGX6 Putative extramembranal protein, DltD protein 1.9863959 0.007545507
U5UFT3 Uncharacterized protein 1.9466195 0.003317242
D5AK62 Glycerone kinase 2.3347569 0.000322562
D5AFI9 10 kDa chaperonin 2.0082726 0.001806473
D5AIC6 Glycosyl transferase, family 2 1.6998268 0.03228385
D5AJI4 rRNA methyltransferase 1.6035513 0.02235448
A0A0Z8I8M7 HTH DNA-binding protein 3.6328652 0.001101631 D5AKC6
Uncharacterized conserved protein, phnB
family 1.6758534 0.0210538
A4VTT8 Uncharacterized protein conserved in bacteria 1.7858986 0.02541207
A0A142USF6 Cell surface protein 4.5403659 0.000385999
A0A0Z8MHH3 Cell division protein DivIB 2.0380576 0.008572645 G7SNC3 Peptide methionine sulfoxide reductase 1.7983347 0.020918891
G7SNQ6 ATP synthase epsilon chain 1.7359168 0.01319804
G5L152 MarR family regulatory protein 1.6179768 0.0126177
A0A168YTG7 Protein GrpE 1.6399504 0.000965257 D5AHN0 Putative glycosyltransferase 1.8984674 0.01284168 A0A116LXX9 30S ribosomal protein S21 1.8938924 0.003285797
U5UJR0 ADP-ribose pyrophosphatase 2.0943586 0.037278999
D5AJE2
ABC-type molybdenum transport system,
ATPase component 1.6774747 0.007432571
A4VTQ9 Uncharacterized protein 1.7075491 0.03281128
A0A0Z8IRA9 Permease 1.9728113 0.022752989
U5UHK2 Carbonic anhydrase 3.8537782 0.004025419
U5UFH3 Uncharacterized protein 2.2648037 0.031845659
G7SMS8 50S ribosomal protein L35 2.221746 0.026703199
G7SNY8 Uncharacterized protein 1.8740049 0.02830475
A0A0Z8IRK2 Segregation and condensation protein B 1.511739 0.02841734
A0A0M9FLF6 Dihydroxyacetone kinase 3.3106588 0.01101587
A0A0Z8DMS4 Recombination protein RecR 1 1.82657 0.03749986
D5AJ33 Aminotransferase 1.5323351 0.021838531
A4VUP9 Hypothetical cytosolic protein 1.95397 0.023828691 D5AIW5 Transcriptional antiterminator bglG 1.5324179 0.009689404 D5AFX4 Heat-inducible transcription repressor HrcA 3.0274035 0.040966172 Q8L0S0 Chloramphenicol acetyltransferase 8.3101189 0.02295992
