Figure S3: Compound induced biomarker expression in primary human hepatocytes. The presented values (relative expression fold changes) represent mean values that were calculated from 1-3 independent experiments. The error bars illustrate the standard deviation of the independent experiments. A gene was considered to be up regulated when crossing the threshold line, which illustrates a significant increase of at least 2.5 fold change induction.
0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0
0.5 1 1.5 2 2.5 3 3.5 4 4.5 5
APAP induced biomarker expression (n=3) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [mM]
Fo ld c h an ge 2 - Δ Δ C T
SULT1C2 expression was below the detection level for 1 donor at 8 µM and 40 µM.
0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0
0.5 1 1.5 2 2.5 3 3.5
ASP induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [mM]
Fo ld c h a n ge 2 - Δ Δ C T
SULT1C2 expression was below the detection level for 1 donor at all concentrations.
0 0.51 2.6
12.8 64
30000 0 0.51 2.6
12.8 64
30000 0 0.51 2.6
12.8 64
30000 0 0.51 2.6
12.8 64
30000 0 0.51 2.6
12.8 64
30000 0 0.51 2.6
12.8 64
30000 0 0.51 2.6
12.8 64 30000 0
0.5 1 1.5 2 2.5 3 3.5 4
BPR induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [nM]
Fo ld c h a n ge 2 - Δ Δ C T
0 1.6 8 40 200
1000 0
1.6 8 40 200
1000 0
1.6 8 40 200
1000 0
1.6 8 40 200
1000 0
1.6 8 40 200
1000 0
1.6 8 40 200
1000 0
1.6 8 40 200 1000 0
1 2 3 4 5 6 7 8
CBZ induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
0 0 0.01
0.06
0.32 90 0 0
0.01 0.06
0.32 90 0 0
0.01 0.06
0.32 90 0 0
0.01 0.06
0.32 90 0 0
0.01 0.06
0.32 90 0 0
0.01 0.06
0.32 90 0 0
0.01 0.06
0.32 90 0
1 2 3 4 5 6
CHL induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
SULT1C2 expression was below the detection level for 1 donor at 2.6 nM and 64 nM.
0 0.06
0.32 1.6 8
400 0
0.06
0.32 1.6 8
400 0
0.06
0.32 1.6 8
400 0
0.06
0.32 1.6 8
400 0
0.06
0.32 1.6 8
400 0
0.06
0.32 1.6 8
400 0
0.06
0.32 1.6 8 400 0
5 10 15 20 25 30 35 40 45
DFN induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
0 0.01
0.06 0.32 1.6
700 0
0.01 0.06
0.32 1.6
700 0
0.01 0.06
0.32 1.6
700 0
0.01 0.06
0.32 1.6
700 0
0.01 0.06
0.32 1.6
700 0
0.01 0.06
0.32 1.6
700 0
0.01 0.06
0.32 1.6 700 0
0.5 1 1.5 2 2.5 3
FAM induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
SULT1C2 expression was below the detection level for 1 donor at all concentrations.
0 0.01
0.06
0.32 1.6 40 0 0.01
0.06
0.32 1.6 40 0 0.01
0.06
0.32 1.6 40 0 0.01
0.06
0.32 1.6 40 0 0.01
0.06
0.32 1.6 40 0 0.01
0.06
0.32 1.6 40 0 0.01
0.06
0.32 1.6 40 0
1 2 3 4 5 6
HYZ induced biomarker expression (n=1) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
0 10 20 30 40 50 60 70
INAH induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [mM]
Fo ld c h a n ge 2 - Δ Δ C T
0 0.06
0.32 1.6 8 40 0 0.06
0.32 1.6 8 40 0 0.06
0.32 1.6 8 40 0 0.06
0.32 1.6 8 40 0 0.06
0.32 1.6 8 40 0 0.06
0.32 1.6 8 40 0 0.06
0.32 1.6 8 40 0
0.5 1 1.5 2 2.5 3
LAB induced biomarker expression (n=1) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
SULT1C2 expression was below the detection level for this donor.
0
0.32 1.6 8 40200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40200 0
0.32 1.6 8 40 200 0
0.5 1 1.5 2 2.5 3
LEV induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
SULT1C2 expression was below the detection level for 1 donor at 200 µM.
0 0.02 0.1
0.51 2.6
100 0
0.02 0.1 0.51 2.6
100 0
0.02 0.1 0.51 2.6
100 0
0.02 0.1 0.51 2.6
100 0
0.02 0.1 0.51 2.6
100 0
0.02 0.1 0.51 2.6
100 0
0.02 0.1 0.51 2.6
100 0
0.5 1 1.5 2 2.5 3
MEL induced biomarker expression (n=1) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [nM]
Fo ld c h a n ge 2 - Δ Δ C T
SULT1C2 expression was below the detection level for this donor at 20 pM, 0.51 nM, 2.6 nM and
100 nM.
0
0.32 1.6 8 40 200 0
0.32 1.6 8 40200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
2 4 6 8 10 12 14
NFT induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
SULT1C2 expression was below the detection level for 1 donor at all concentrations.
0
0.32 1.6 8 40 330 0
0.32 1.6 8 40330 0
0.32 1.6 8 40 330 0
0.32 1.6 8 40 330 0
0.32 1.6 8 40 330 0
0.32 1.6 8 40 330 0
0.32 1.6 8 40 330 0
2 4 6 8 10 12
NIM induced gene expression (n=1) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
SULT1C2 expression was below the detection level for this donor at all concentrations.
0 1.6 8 40 200
1000 0
1.6 8 40 200
1000 0
1.6 8 40 200
1000 0
1.6 8 40 200
1000 0
1.6 8 40200
1000 0
1.6 8 40 200
1000 0
1.6 8 40 200 1000 0
2 4 6 8 10 12 14 16 18
PhB induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
0 0.01
0.06
0.32 1.6 35 0 0.01
0.06
0.32 1.6 35 0 0.01
0.06
0.32 1.6 35 0 0.01
0.06
0.32 1.6 35 0 0.01
0.06
0.32 1.6 35 0 0.01
0.06
0.32 1.6 35 0 0.01
0.06
0.32 1.6 35 0
1 2 3 4 5 6
PMZ induced biomarker expression (n=2) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
SULT1C2 expression was below the detection level for 1 donor at 320 nM.
0 0.5 1 1.5 2 2.5 3
PPL induced biomarker expression (n=1) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
0.32 1.6 8 40 200 0
1 2 3 4 5 6 7 8
RIF induced biomarker expression (n=3) PHH
CYP1B1 CYP3A7 Tubb2b Fibin G6PD RGCC Fbxo32 Baseline
Concentration [µM]
Fo ld c h a n ge 2 - Δ Δ C T
0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0 0.01
0.04 0.2 1 5 0
5 10 15 20 25 30 35 40
VPA induced biomarker expression (n=3) PHH
CYP1B1 CYP3A7 Tubb2b SULT1C2 Fibin G6PD RGCC Fbxo32 Threshhold