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An introduction to the Data Library PANGAEA®

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An introduction to the Data Library PANGAEA®

Stefanie Schumacher & Rainer Sieger

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Data publishing and archiving

5000 years of libraries

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Data publishing and archiving

50 years of World Data Center

Data base

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Airglow, Astronomy, Atmospheric, Trace Gases, Aurora, Biodiversity

Climate, Cosmic Rays, Earth Tides, Geology, Geomagnetism, Glaciology, Human Interactions in the Environment, Ionosphere, Land Cover Data, Marine Environmental Sciences, Marine Geology and Geophysics, Meteorology, Nuclear Radiation,

Oceanography, Paleoclimatology, Remotely Sensed Data, Renewable Resources and Environment, Rockets and Satellites, Rotation of the Earth, Seismology, Soils, Solar Activity, Solar Radio Emissions, Solar Terrestrial Physics, Solid Earth Geophysics, Space Science, Sunspot Index

Data publishing and archiving

Leg related data base for all shipboard and some post-cruis data

Taxonomy and ecology of plankton

...

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Dissemination of data and metadata

via search engines, library catalogs and portals

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Why should I archive my data?

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Data sharing and archiving

Nature:

Vol 461, 10 September 2009

doi:10.1038/461145a

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DFG Recommendations for

Good Scientific Practice

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Open Access

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PANGAEA is an open access data library for earth system research. Data are stored georeferenced in space and time in a relational database and a tape archive.

The data content is accessible on the internet via a search engine, a data warehouse and web services.

The system is open to any scientist or project to archive and publish data.

What is PANGAEA ® ?

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History & Milestones

1987 Core repository database

1989 SEDI/SEDAT proprietary predecessor 1994 SEDAN/SEPAN relation predecessor 1996 PANGAEA

1998 www.pangaea.de 2001 WDC-MARE 2004 OAI and DOI

2006 Data citation, portal software 2008 Data warehouse

2009 Elsevier-Partnership

each dataset can be identified, shared,

published and cited by using a Digital

Object Identifier (DOI)

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doi:10.1016/S0098-3004(02)00039-0

Digital Object Identifier - DOI

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DOI – Digital Object Identifier

Is a character string used to uniquely identify an electronic document or object.

The DOI of a document is permanent, whereas its location and other metadata may change

Is resolved by a doi-resolver: http://dx.doi.org/

Example:

http://dx.doi.org/10.1594/PANGAEA.737668

doi:10.1594/PANGAEA.737668

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Who are the hosts of PANGAEA ?

Alfred Wegener Institute for Polar and Marine Research, Bremerhaven

Center for Marine Environmental Sciences, Bremen

Both institutions have committed to long-term operate PANGAEA

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Supplementary repository

100 Pages as pdf – not useable

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Relational database – machine-readable

doi:10.1594/PANGAEA.775547

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Model Data

Data Project

Event

Method

Parameter Reference

Author

Meta - data

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Geo-code & meta-data

123.4 text

parameter [unit]

what ?

date/time or age

when ?

latitude longitude

ice, water, air,

sediment, object...

where ?

who ?

investigator reference

how ?

method

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Data-Publication with PANGAEA

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PANGAEA is a designated archive

for the journal

Earth System Science Data (ESSD)

doi:10.1594/PANGAEA.547983

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Final data report for projects

CD/DVD with data and local search engine

Description and further information in a booklet

Distribution through 270

libraries with focus on marine

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What kind off data can I found -

what kind of data can be published/archived

in PANGAEA

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International EU National

BSRN OMARC rcom

JGOFS CarboOcean SIRRO

WOCE EurOceans HISTRA

EPICA HERMES/Hermione ARCOD

IODP EPOCA DFG/BMBF

Major Projects

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!   Sediment profile

!   Seismic profile

!   Mineral distribution

!   Geological map

Examples from Geoscientific Research

IRD ( gra v/10 cm 3) Sand ( %)

CaCO3 ( %)

TO C ( %) Radi o ( %/ sand) Sme ct ( %/ cla y) IRD ( gra v/10 cm 3) Sand ( %)

CaCO3 ( %)

TO C ( %) Radi o ( %/ sand) Sme ct ( %/ cla y) IRD ( gra v/10 cm 3) Sand ( %)

CaCO3 ( %)

TO C ( %) Radi o ( %/ sand) Sme ct ( %/ cla y) IRD ( gra v/10 cm 3) Sand ( %) CaCO3

( %) TO C ( %) Radi o ( %/ sand) Sme ct ( %/ cla y) IRD ( gra v/10 cm 3) Sand ( %) CaCO3

( %) TO C ( %) Radi o ( %/ sand) Sme ct ( %/ cla y)

PS1 38 9 -3 PS1 39 0 -3 PS1 43 1 -1 PS1 64 0 -1 PS1 64 8 -1

Age(kyr)max. : 233.55 k yr PS1389-3ff

0.0

100.0

200.0

0 200 1000 150 0.50 500 1000 200 1000 150 0.50 500 1000 200 1000 150 0.50 500 1000 200 1000 150 0.50 500 1000 200 1000 150 0.50 500 100

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!   Images

!   Distributed samples

!   Hydrographic profiles

!   Times Series

Examples from Environmental Research

54° 0' 54° 0'

54°30' 54°30'

55° 0' 55° 0'

55°30' 55°30'

11°

11°

12°

12°

13°

13°

14°

14°

15°

15°

World vector shore line Grain size class KOLP A Grain size class KOEHN2 Grain size class KOEHN Geochemistry Grain size class KOLP B Grain size class KOLP DIN 20 m Scale: 1:2695194 at Latitude 0°

Source: Baltic Sea Research Institute, Warnemünde.

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Examples from Antarctic Research

Southern Ocean Atlas Ozone profiles Sediments and Rocks

EPICA

CRP Archive of

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JGOFS

Joint Global Ocean Flux Studies

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Sea-bed photos

doi:10.1594/PANGAEA.319877

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Sediment core documentation

doi:10.1594/PANGAEA.108079

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Geological map

doi:10.1594/PANGAEA.138789

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doi:10.1594/PANGAEA.351142

Bathymetry

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Meteorological observations

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Data Archeology

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DSDP / ODP / IODP

The PANGAEA web server operates the Mirror Site for the Ocean Drilling Program (ODP) in Europe.

http://odp.pangaea.de

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International Polar Year (1882-1883)

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Data Access

Search engine > works like Google

Web service > exchange with portals

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Globigerina bulloides Distribution map (ODV)

Pan2Applic

Data-Warehouse > retrieval & compilati on

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PANGAEA

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Data provided by author/

principle investigator

During manuscript preparation or submission

data can be password protected until paper publication

Submit data

Provision of data

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Workflow in data publishing

!   Provision of data (PI)

!   Import to PANGAEA (curator)

!   Proof-Read (PI)

!   Corrections (curator/editor)

!   Peer review (reviewer ?)

!   Publication with DOI & citation

Editorial

Review

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Practical application -

On-the-job training

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