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Supplementary Information. Supplementary data Table S1

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Supplementary Information.

Supplementary data Table S1 Detail of Information SARS-CoV-2 Sequence Wuhan Samples Data

Sequence_ID Location Gender Age Submission Date

Sequence Length

Database Clade EPI_ISL_402120 Wuhan Male 61 2020-01-10 29,896 bp GSAID L EPI_ISL_402121 Wuhan Male 32 2020-01-11 29,891 bp GSAID L EPI_ISL_402132 Wuhan Female 49 2020-01-19 29,848 bp GSAID L EPI_ISL_406798 Wuhan Male 44 2020-01-30 29,866 bp GSAID L EPI_ISL_406800 Wuhan Female 21 2020-01-30 29,868 bp GSAID L EPI_ISL_406801 Wuhan Male 39 2020-01-30 29,872 bp GSAID S EPI_ISL_412899 Wuhan Female 49 2020-02-28 29,848 bp GSAID L EPI_ISL_434534 Wuhan Male 32 2020-04-28 29,892 bp GSAID L EPI_ISL_493166 Wuhan Female 54 2020-07-21 29,663 bp GSAID L hCoV-19_A137 Wuhan Female 47 2020-05-03 29,663 bp NGDC L hCoV-19_A142 Wuhan Female 48 2020-05-03 29,663 bp NGDC L hCoV-19_A145 Wuhan Female 41 2020-05-03 29,663 bp NGDC L hCoV-19_A148 Wuhan Male 44 2020-05-03 29,663 bp NGDC L hCoV-19_A152 Wuhan Male 53 2020-05-03 29,663 bp NGDC L hCoV-19_A153 Wuhan Female 29 2020-05-03 29,663 bp NGDC L hCoV-19_A160 Wuhan Female 30 2020-05-03 29,835 bp NGDC L hCoV-19_A163 Wuhan Female 48 2020-05-03 29,834 bp NGDC L hCoV-19_A164 Wuhan Female 52 2020-05-03 29,834 bp NGDC L hCoV-19_A167 Wuhan Male 23 2020-05-03 29,834 bp NGDC L hCoV-19_A168 Wuhan Female 47 2020-05-03 29,834 bp NGDC L hCoV-19_A169 Wuhan Female 25 2020-05-03 29,836 bp NGDC L hCoV-19_A170 Wuhan Female 56 2020-05-03 29,834 bp NGDC L hCoV-19_A171 Wuhan Male 43 2020-05-03 29,833 bp NGDC L hCoV-19_A174 Wuhan Male 60 2020-05-03 29,663 bp NGDC L hCoV-19_A182 Wuhan Male 29 2020-05-03 29,834 bp NGDC L hCoV-19_A191 Wuhan Female 30 2020-05-03 29,663 bp NGDC L IPBCAMS-WH-01 Wuhan Male 65 2020-01-26 29,899 bp NGDC L IPBCAMS-WH-02 Wuhan Female 49 2020-01-26 29,899 bp NGDC L IPBCAMS-WH-03 Wuhan Female 52 2020-01-26 29,899 bp NGDC L IPBCAMS-WH-04 Wuhan Female 52 2020-01-26 29,890 bp NGDC L IPBCAMS-WH-05 Wuhan Male 61 2020-01-26 29,883 bp NGDC L

MN996527 Wuhan Male 32 2020-03-18 29,825 bp NCBI L

MN996528 Wuhan Female 49 2020-03-18 29,891 bp NCBI L

MN996529 Wuhan Female 52 2020-03-18 29,852 bp NCBI L

MN996530 Wuhan Male 40 2020-03-18 29,854 bp NCBI L

MN996531 Wuhan Male 56 2020-03-18 29,857 bp NCBI L

MN908947.3 Wuhan Male 41 2020-01-10 29,903 bp NCBI Wuhan-1

Supplementary data Table S2 Detail of Information SARS-CoV-2 Sequence Indonesia

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Samples Data

Sequence_ID Location Gender Age Submission Date

Sequence Length

Database Clade EPI_ISL_435281 Jakarta Male 68 2020-05-04 29,859 bp GSAID L EPI_ISL_435282 Jakarta Female 29 2020-05-04 29,920 bp GSAID L EPI_ISL_435283 Jakarta Male 57 2020-05-04 29,923 bp GSAID O EPI_ISL_437187 Surabaya Male 51 2020-05-08 29,901 bp GSAID GH EPI_ISL_437188 Surabaya Male 46 2020-05-08 29,890 bp GSAID GH EPI_ISL_437189 Jakarta Male 75 2020-05-08 29,903 bp GSAID L EPI_ISL_437190 Jakarta Male 77 2020-05-08 29,903 bp GSAID L EPI_ISL_437191 Jakarta Female 25 2020-05-08 29,895 bp GSAID L EPI_ISL_437192 Jakarta Male 62 2020-05-08 29,896 bp GSAID L EPI_ISL_458079 Surabaya Male 71 2020-06-03 29,891 bp GSAID L EPI_ISL_458081 Pasuruan Male 39 2020-06-03 29,891 bp GSAID L EPI_ISL_458083 Surabaya Male 42 2020-06-03 29,890 bp GSAID L EPI_ISL_467374 Samarinda Female 31 2020-06-13 29,864 bp GSAID L EPI_ISL_467375 Manado Female 70 2020-06-13 29,767 bp GSAID L EPI_ISL_467376 Jakarta Male 74 2020-06-13 29,842 bp GSAID L EPI_ISL_511879 Bandung Female 34 2020-08-10 29,866 bp GSAID GH EPI_ISL_516800 Yogyakarta Male 77 2020-08-23 29,903 bp GSAID GH EPI_ISL_516806 Yogyakarta Male 30 2020-08-24 29,884 bp GSAID L EPI_ISL_516829 Yogyakarta Female 83 2020-08-24 29,900 bp GSAID GH EPI_ISL_518819 Tangerang Male 56 2020-08-25 29,782 bp GSAID GH EPI_ISL_525492 Central Java Female 55 2020-08-31 29,867 bp GSAID GH EPI_ISL_528745 West Java Male 47 2020-09-09 29,893 bp GSAID GH EPI_ISL_528746 West Java Male 56 2020-09-09 29,897 bp GSAID GH EPI_ISL_528747 West Java Male 22 2020-09-09 29,897 bp GSAID GR EPI_ISL_528748 West Java Male 32 2020-09-09 29,882 bp GSAID G EPI_ISL_528749 West Java Male 61 2020-09-09 29,871 bp GSAID GH EPI_ISL_528750 West Java Male 35 2020-09-09 29,873 bp GSAID GH EPI_ISL_528751 West Java Male 41 2020-09-09 29,897 bp GSAID GH EPI_ISL_528752 West Java Male 47 2020-09-09 29,881 bp GSAID GH EPI_ISL_528753 West Java Male 17 2020-09-09 29,868 bp GSAID GH EPI_ISL_528759 West Java Male 37 2020-09-09 29,865 bp GSAID GH EPI_ISL_529138 Surabaya Male 63 2020-09-10 29,901 bp GSAID GH EPI_ISL_529961 Surabaya Male 55 2020-09-10 29,892 bp GSAID L EPI_ISL_529962 Surabaya Female 43 2020-09-10 29,890 bp GSAID L EPI_ISL_529963 Surabaya Male 42 2020-09-10 29,891 bp GSAID GH EPI_ISL_529964 Pasuruan Male 39 2020-09-10 29,894 bp GSAID L EPI_ISL_529965 Surabaya Female 77 2020-09-10 29,899 bp GSAID GH EPI_ISL_529966 Sidoarjo Female 40 2020-09-10 29,900 bp GSAID GH EPI_ISL_529967 Sidoarjo Male 75 2020-09-10 29,902 bp GSAID GH

Supplementary data Table S3 Mutation of SARS-CoV-2 from Wuhan Samples

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Sequence_ID Mutations EPI_ISL_402120 NS7a P34S EPI_ISL_402132 Spike F32I

EPI_ISL_406798 NSP3 L1417I, NSP6 N264K EPI_ISL_406801 NS8 L84S

EPI_ISL_493166 NSP3 W1632stop, NSP10 T51A hCoV-19_A142 NSP2 N92H, NSP14 P24T hCoV-19_A148 Spike N856K, NSP2 N92H hCoV-19_A152 NSP2 N92H

hCoV-19_A160 Spike N856K, NSP2 N92H hCoV-19_A163 Spike N856K, NSP2 N92H hCoV-19_A168 NSP2 N92H, NSP12 D62G hCoV-19_A169 NSP13 V98F

hCoV-19_A170 NSP14 G114D

hCoV-19_A191 M K15Q, NS8 L84S, NSP3 V57L IPBCAMS-WH-01 NSP3 N1890S, NSP4 F145I IPBCAMS-WH-03 NSP3 I1426T

IPBCAMS-WH-05 NSP3 G1716V MN996527 NSP16 D220N

MN996529 NSP3 G1433S, NSP16 K160R MN996531 NSP3 D1761A, NSP4 T327I

Supplementary data Table S4 Mutation of SARS-CoV-2 from Indonesia Samples

Sequence_ID Mutations

EPI_ISL_435281 NSP3 S1285F

EPI_ISL_435282 NSP2 I281V, NSP12 A399V EPI_ISL_435283 Spike T76I, NSP6 L37F

EPI_ISL_437187 Spike D614G, NS3 Q57H, NSP2 T85I, NSP3 Q311R, NSP3 Q941P, NSP12 P323L EPI_ISL_437188 Spike D614G, Spike Q677H, Spike S116C, NS3 Q57H, NSP12 P227L, NSP12 P323L EPI_ISL_437189 Spike V622F, NSP12 A399V

EPI_ISL_437191 NSP6 Q208H

EPI_ISL_437192 Spike L822F, Spike T572I, N K347N, NSP12 A399V, NSP12 E744D EPI_ISL_458079 NSP12 A399V, NSP12 V354L

EPI_ISL_458081 Spike A352S, NSP3 E1271D, NSP13 R392H EPI_ISL_467374 Spike A672V

EPI_ISL_467376 Spike C1254F

EPI_ISL_511879 Spike D614G, Spike N185Y, NS3 Q57H, NSP3 V950I, NSP6 L37F, NSP12 P227L, NSP12 P323L, NSP15 V172I

EPI_ISL_516800 Spike D614G, NS3 Q57H, NSP3 P822L, NSP12 P323L EPI_ISL_516806 NSP5 M49I

EPI_ISL_516829 Spike D614G, N Q160R, NS3 A54V, NS3 A99S, NS3 Q57H, NSP3 P679S, NSP12 A656S, NSP12 P323L, NSP13 M576I

EPI_ISL_518819 Spike D614G, Spike S477I, Spike T22P, N P20L, NS3 L106F, NS3 Q57H, NSP3 L27F, NSP12 P227L, NSP12 P323L, NSP15 F15S

EPI_ISL_525492 Spike D614G, NS3 Q57H, NS7a H73Y, NSP3 P822L, NSP12 P323L

EPI_ISL_528745 Spike D614G, NS3 Q57H, NSP2 I273T, NSP12 P227L, NSP12 P323L, NSP14 M500I EPI_ISL_528746 Spike D614G, NS3 Q57H, NSP2 G339S, NSP6 G277S, NSP12 P227L, NSP12 P323L EPI_ISL_528747 Spike D614G, N G204R, N R203K, NSP12 P323L, NSP14 A504S

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EPI_ISL_528748 Spike D614G, NSP12 P323L

EPI_ISL_528749 Spike D614G, Spike R214L, NS3 Q57H, NSP2 T85I, NSP12 P323L

EPI_ISL_528750 Spike D614G, Spike R158S, NS3 Q57H, NS3 T223I, NSP3 A450S, NSP12 A529V, NSP12 P323L, NSP14 A281S

EPI_ISL_528751 Spike D614G, Spike Q677H, NS3 Q57H, NSP4 A446V, NSP12 A529V, NSP12 P227L, NSP12 P323L, NSP16 K160R

EPI_ISL_528752 Spike D614G, N S193I, NS3 Q57H, NSP3 C1641F, NSP3 P822L, NSP3 T64I, NSP12 G596S, NSP12 P323L, NSP15 V127F

EPI_ISL_528753 Spike D614G, NS3 Q57H, NSP2 I273T, NSP12 P227L, NSP12 P323L, NSP14 M500I EPI_ISL_528759 Spike D614G, Spike Q677H, Spike T95I, NS3 D222Y, NS3 Q57H, NSP12 P227L,

NSP12 P323L

EPI_ISL_529138 Spike D614G, NS3 Q57H, NSP12 P323L EPI_ISL_529961 NSP15 Y225C

EPI_ISL_529963 Spike A67V, Spike D614G, Spike T22I, E P71S, NS3 Q57H, NS8 A51V, NSP3 S1670F, NSP12 P227L, NSP12 P323L

EPI_ISL_529964 Spike A352S, NSP3 E1271D, NSP13 R392H

EPI_ISL_529965 Spike D614G, NS3 Q57H, NSP12 P227L, NSP12 P323L EPI_ISL_529966 Spike D614G, NS3 Q57H, NSP12 P323L

EPI_ISL_529967 Spike D614G, NS3 Q57H, NSP12 P227L, NSP12 P323L

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