Dark
Time Gene Expression Std. Error 95% C.I. P(H1) Result
3:00 AM fcpB 0,187 0,049 ‐ 1,869 0,016 ‐ 4,087 0,094 6:00 AM fcpB 0,271 0,043 ‐ 6,207 0,019 ‐ 13,575 0,342 9:00 AM fcpB 0,985 0,269 ‐ 13,122 0,063 ‐ 28,698 0,983 12:00 PM fcpB 1,607 0,547 ‐ 4,581 0,245 ‐ 6,964 0,477
3:00 PM fcpB 0,219 0,084 ‐ 0,668 0,029 ‐ 1,052 0,04 DOWN 6:00 PM fcpB 0,121 0,037 ‐ 0,257 0,024 ‐ 0,322 0,012 DOWN 9:00 PM fcpB 0,075 0,036 ‐ 0,240 0,009 ‐ 0,318 0,012 DOWN 12:00 AM fcpB 0,056 0,019 ‐ 0,136 0,010 ‐ 0,164 0,004 DOWN 3:00 AM fcpB 0,054 0,019 ‐ 0,200 0,006 ‐ 0,353 0,005 DOWN 6:00 AM fcpB 0,06 0,022 ‐ 0,142 0,010 ‐ 0,191 0,006 DOWN 9:00 AM fcpB 0,5 0,175 ‐ 2,451 0,048 ‐ 4,796 0,387
3:00 AM Lhcx1 1,11 0,724 ‐ 1,968 0,478 ‐ 2,133 0,742 6:00 AM Lhcx1 4,23 2,540 ‐ 6,441 1,975 ‐ 9,796 0,024 UP 9:00 AM Lhcx1 13,965 7,401 ‐ 24,001 3,670 ‐ 39,651 0,026 UP 12:00 PM Lhcx1 5,173 1,728 ‐ 13,496 0,857 ‐ 26,140 0,061
3:00 PM Lhcx1 1,511 0,540 ‐ 3,922 0,420 ‐ 7,597 0,516 6:00 PM Lhcx1 2,455 0,435 ‐ 19,898 0,216 ‐ 38,540 0,439 9:00 PM Lhcx1 0,87 0,504 ‐ 1,459 0,304 ‐ 2,805 0,733 12:00 AM Lhcx1 0,564 0,329 ‐ 0,984 0,256 ‐ 1,211 0,13
3:00 AM Lhcx1 0,378 0,090 ‐ 1,850 0,070 ‐ 3,584 0,247 6:00 AM Lhcx1 0,471 0,143 ‐ 1,464 0,071 ‐ 2,552 0,324 9:00 AM Lhcx1 5,11 1,514 ‐ 16,944 0,872 ‐ 30,072 0,04 UP 3:00 AM Lhcx2 1,359 0,484 ‐ 3,270 0,367 ‐ 5,871 0,477 6:00 AM Lhcx2 1,666 0,569 ‐ 4,404 0,397 ‐ 7,912 0,399 9:00 AM Lhcx2 2,086 0,940 ‐ 5,446 0,429 ‐ 10,899 0,242 12:00 PM Lhcx2 0,514 0,198 ‐ 1,501 0,097 ‐ 2,703 0,233 3:00 PM Lhcx2 0,175 0,059 ‐ 0,586 0,026 ‐ 1,053 0,067
6:00 PM Lhcx2 0,167 0,042 ‐ 0,545 0,037 ‐ 0,980 0,042 DOWN 9:00 PM Lhcx2 0,221 0,087 ‐ 0,487 0,066 ‐ 0,875 0,007 DOWN 12:00 AM Lhcx2 0,183 0,060 ‐ 0,481 0,052 ‐ 0,866 0,036 DOWN
3:00 AM Lhcx2 0,181 0,046 ‐ 0,645 0,026 ‐ 1,849 0,064 6:00 AM Lhcx2 0,179 0,050 ‐ 0,750 0,017 ‐ 1,350 0,062 9:00 AM Lhcx2 0,419 0,100 ‐ 1,729 0,061 ‐ 3,110 0,282 3:00 AM Lhcx3 0,59 0,403 ‐ 0,818 0,342 ‐ 1,072 0,08 6:00 AM Lhcx3 0,504 0,258 ‐ 0,894 0,219 ‐ 1,483 0,088 9:00 AM Lhcx3 0,64 0,220 ‐ 2,724 0,128 ‐ 4,853 0,577 12:00 PM Lhcx3 0,205 0,062 ‐ 0,834 0,036 ‐ 1,485 0,076
3:00 PM Lhcx3 0,144 0,052 ‐ 0,488 0,036 ‐ 0,869 0,026 DOWN 6:00 PM Lhcx3 0,223 0,027 ‐ 1,183 0,016 ‐ 1,664 0,169
9:00 PM Lhcx3 0,201 0,059 ‐ 0,574 0,034 ‐ 1,022 0,042 DOWN 12:00 AM Lhcx3 0,157 0,058 ‐ 0,314 0,033 ‐ 0,432 0,022 DOWN
3:00 AM Lhcx3 0,17 0,027 ‐ 0,830 0,015 ‐ 1,391 0,068
6:00 AM Lhcx3 0,094 0,019 ‐ 0,339 0,011 ‐ 0,445 0,013 DOWN 9:00 AM Lhcx3 0,376 0,098 ‐ 1,175 0,057 ‐ 1,832 0,258
3:00 AM Lhcx4 1,042 0,660 ‐ 1,701 0,436 ‐ 2,239 0,832 6:00 AM Lhcx4 1,221 0,554 ‐ 2,721 0,382 ‐ 4,210 0,683 9:00 AM Lhcx4 1,789 1,066 ‐ 2,924 0,742 ‐ 3,918 0,101 12:00 PM Lhcx4 4,431 2,416 ‐ 9,101 1,914 ‐ 15,260 0,004 UP
3:00 PM Lhcx4 6,835 3,819 ‐ 13,311 2,626 ‐ 19,580 0,003 UP 6:00 PM Lhcx4 5,77 3,955 ‐ 8,447 3,165 ‐ 10,099 0,017 UP 9:00 PM Lhcx4 5,894 4,359 ‐ 8,228 3,030 ‐ 11,048 0,018 UP 12:00 AM Lhcx4 4,023 2,693 ‐ 5,934 2,052 ‐ 8,055 0,007 UP
3:00 AM Lhcx4 2,204 1,286 ‐ 3,817 0,802 ‐ 5,027 0,071 6:00 AM Lhcx4 2,017 1,353 ‐ 3,121 0,939 ‐ 3,921 0,037 UP 9:00 AM Lhcx4 4,689 2,756 ‐ 9,076 1,896 ‐ 14,841 0,002 UP
Table A.10A,caption on page 140
Low Light
Time Gene Expression Std. Error 95% C.I. P(H1) Result
3:00 AM fcpB 0,063 0,028 ‐ 0,143 0,019 ‐ 0,192 0,01 DOWN 6:00 AM fcpB 0,079 0,037 ‐ 0,193 0,022 ‐ 0,230 0,019 DOWN 9:00 AM fcpB 0,114 0,040 ‐ 0,401 0,030 ‐ 0,649 0,006 DOWN 12:00 PM fcpB 1,418 0,691 ‐ 2,426 0,438 ‐ 5,008 0,446
3:00 PM fcpB 5,318 2,813 ‐ 10,077 1,918 ‐ 14,203 0 UP
6:00 PM fcpB 3,931 2,025 ‐ 5,598 1,634 ‐ 10,594 0 UP
9:00 PM fcpB 1,004 0,438 ‐ 2,266 0,298 ‐ 3,276 0,97
12:00 AM fcpB 0,041 0,015 ‐ 0,128 0,013 ‐ 0,297 0,005 DOWN 3:00 AM fcpB 0,016 0,007 ‐ 0,036 0,004 ‐ 0,083 0,016 DOWN 6:00 AM fcpB 0,014 0,006 ‐ 0,032 0,004 ‐ 0,057 0,009 DOWN 9:00 AM fcpB 0,054 0,024 ‐ 0,121 0,017 ‐ 0,169 0,008 DOWN 3:00 AM Lhcx1 0,68 0,374 ‐ 1,192 0,316 ‐ 1,513 0,306
6:00 AM Lhcx1 3,084 1,695 ‐ 5,520 1,343 ‐ 7,402 0,008 UP 9:00 AM Lhcx1 86,116 46,397 ‐ 156,798 35,006 ‐ 220,401 0 UP 12:00 PM Lhcx1 44,005 21,743 ‐ 99,140 12,192 ‐ 140,775 0 UP 3:00 PM Lhcx1 13,179 6,742 ‐ 21,645 5,249 ‐ 40,943 0 UP 6:00 PM Lhcx1 2,52 1,197 ‐ 5,512 0,803 ‐ 8,040 0,021 UP 9:00 PM Lhcx1 1,255 0,683 ‐ 2,590 0,396 ‐ 3,546 0,573 12:00 AM Lhcx1 2,923 1,478 ‐ 5,207 1,070 ‐ 9,294 0,033 UP
3:00 AM Lhcx1 0,715 0,373 ‐ 1,342 0,356 ‐ 1,415 0,332 6:00 AM Lhcx1 1,827 1,019 ‐ 3,501 0,683 ‐ 4,444 0,144 9:00 AM Lhcx1 66,518 32,826 ‐ 123,134 25,325 ‐ 193,915 0,005 UP 3:00 AM Lhcx2 1,257 0,772 ‐ 2,048 0,555 ‐ 2,575 0,426 6:00 AM Lhcx2 1,132 0,697 ‐ 1,702 0,567 ‐ 2,270 0,692 9:00 AM Lhcx2 6,681 4,227 ‐ 12,890 2,378 ‐ 15,275 0 UP
12:00 PM Lhcx2 4,81 3,048 ‐ 8,770 1,598 ‐ 11,530 0 UP
3:00 PM Lhcx2 2,317 1,331 ‐ 3,927 0,999 ‐ 5,099 0,056 6:00 PM Lhcx2 1,435 0,859 ‐ 2,651 0,532 ‐ 3,336 0,213 9:00 PM Lhcx2 0,946 0,531 ‐ 1,723 0,354 ‐ 2,514 0,793 12:00 AM Lhcx2 1,849 1,016 ‐ 3,329 0,679 ‐ 5,372 0,105 3:00 AM Lhcx2 1,775 0,892 ‐ 3,230 0,631 ‐ 6,097 0,189 6:00 AM Lhcx2 1,617 0,940 ‐ 3,168 0,486 ‐ 3,997 0,244 9:00 AM Lhcx2 5,213 1,853 ‐ 12,273 0,874 ‐ 20,109 0,041 UP 3:00 AM Lhcx3 0,662 0,377 ‐ 1,055 0,292 ‐ 1,523 0,191 6:00 AM Lhcx3 0,479 0,251 ‐ 0,897 0,171 ‐ 1,340 0,121 9:00 AM Lhcx3 2,453 1,497 ‐ 4,007 1,154 ‐ 4,955 0,025 UP 12:00 PM Lhcx3 2,479 1,537 ‐ 4,782 0,719 ‐ 6,380 0,064
3:00 PM Lhcx3 1,203 0,700 ‐ 2,253 0,461 ‐ 2,631 0,567 6:00 PM Lhcx3 1,169 0,679 ‐ 2,208 0,478 ‐ 2,536 0,612 9:00 PM Lhcx3 1,658 0,911 ‐ 3,190 0,641 ‐ 4,004 0,147 12:00 AM Lhcx3 2,44 1,464 ‐ 4,490 1,032 ‐ 5,313 0,036 UP
3:00 AM Lhcx3 1,059 0,625 ‐ 1,677 0,527 ‐ 1,916 0,846 6:00 AM Lhcx3 0,83 0,447 ‐ 1,290 0,342 ‐ 2,211 0,643 9:00 AM Lhcx3 4,512 2,136 ‐ 7,369 1,794 ‐ 16,942 0,008 UP 3:00 AM Lhcx4 3,472 0,780 ‐ 93,628 0,544 ‐ 134,255 0,342 6:00 AM Lhcx4 4,326 1,038 ‐ 109,534 0,649 ‐ 172,304 0,123 9:00 AM Lhcx4 5,218 1,252 ‐ 138,704 0,837 ‐ 205,554 0,296 12:00 PM Lhcx4 7,018 1,529 ‐ 180,091 0,980 ‐ 314,964 0,038 UP
3:00 PM Lhcx4 6,607 1,670 ‐ 158,181 0,927 ‐ 284,020 0,069 6:00 PM Lhcx4 8,068 1,896 ‐ 203,060 1,213 ‐ 335,943 0,006 UP 9:00 PM Lhcx4 10,449 2,409 ‐ 229,286 1,286 ‐ 504,515 0,011 UP 12:00 AM Lhcx4 5,988 1,380 ‐ 159,541 0,905 ‐ 239,732 0,039 UP
3:00 AM Lhcx4 5,509 1,087 ‐ 169,103 0,996 ‐ 183,110 0,051 6:00 AM Lhcx4 9,256 1,920 ‐ 264,705 1,581 ‐ 335,897 0,01 UP 9:00 AM Lhcx4 15,099 3,534 ‐ 378,898 2,279 ‐ 641,535 0,026 UP
Table A.10B,caption on page 140
A.6. Supplementary Material, Chapter 7
Moderate High Light
Time Gene Expression Std. Error 95% C.I. P(H1) Result
3:00 AM fcpB 0,345 0,058 ‐ 4,312 0,008 ‐ 14,486 0,422 6:00 AM fcpB 0,492 0,092 ‐ 8,360 0,005 ‐ 26,378 0,538
9:00 AM fcpB 0,012 0,003 ‐ 0,149 0,003 ‐ 0,182 0,043 DOWN 12:00 PM fcpB 0,004 0,001 ‐ 0,040 0,001 ‐ 0,067 0,023 DOWN 3:00 PM fcpB 0,023 0,006 ‐ 0,204 0,004 ‐ 0,484 0,043 DOWN 6:00 PM fcpB 0,082 0,022 ‐ 0,955 0,017 ‐ 1,409 0,103
9:00 PM fcpB 0,09 0,024 ‐ 1,027 0,017 ‐ 1,634 0,11 12:00 AM fcpB 0,081 0,024 ‐ 0,863 0,016 ‐ 1,426 0,072
3:00 AM fcpB 0,162 0,049 ‐ 1,582 0,029 ‐ 3,088 0,136 6:00 AM fcpB 0,17 0,050 ‐ 1,843 0,033 ‐ 3,003 0,12
9:00 AM fcpB 0,015 0,004 ‐ 0,148 0,003 ‐ 0,283 0,011 DOWN 3:00 AM Lhcx1 0,708 0,336 ‐ 1,110 0,262 ‐ 1,326 0,32
6:00 AM Lhcx1 3,469 1,740 ‐ 5,743 1,193 ‐ 7,599 0 UP
9:00 AM Lhcx1 63,593 37,260 ‐ 132,639 18,517 ‐ 169,927 0,006 UP 12:00 PM Lhcx1 53,691 24,183 ‐ 83,243 21,179 ‐ 92,183 0,001 UP 3:00 PM Lhcx1 35,389 18,245 ‐ 79,320 9,789 ‐ 101,619 0 UP 6:00 PM Lhcx1 12,403 6,285 ‐ 19,927 4,282 ‐ 24,591 0,004 UP
9:00 PM Lhcx1 5,3 2,486 ‐ 8,176 2,011 ‐ 9,883 0 UP
12:00 AM Lhcx1 8,4 3,959 ‐ 13,199 3,157 ‐ 17,883 0,013 UP 3:00 AM Lhcx1 1,414 0,749 ‐ 2,244 0,474 ‐ 2,837 0,319 6:00 AM Lhcx1 2,903 1,389 ‐ 4,752 1,059 ‐ 5,389 0,03 UP 9:00 AM Lhcx1 21,537 11,518 ‐ 37,835 6,999 ‐ 49,431 0,008 UP 3:00 AM Lhcx2 1,059 0,529 ‐ 2,505 0,330 ‐ 3,952 0,903 6:00 AM Lhcx2 1,203 0,716 ‐ 2,943 0,325 ‐ 4,107 0,687 9:00 AM Lhcx2 44,39 30,956 ‐ 91,869 14,805 ‐ 113,786 0,022 UP 12:00 PM Lhcx2 38,173 19,431 ‐ 69,173 11,251 ‐ 85,606 0,029 UP 3:00 PM Lhcx2 21,601 14,354 ‐ 42,100 7,572 ‐ 52,143 0,019 UP 6:00 PM Lhcx2 19,919 10,996 ‐ 32,059 7,265 ‐ 38,962 0,023 UP 9:00 PM Lhcx2 15,729 9,146 ‐ 26,373 5,444 ‐ 32,435 0,025 UP 12:00 AM Lhcx2 23,197 11,760 ‐ 33,408 9,513 ‐ 40,068 0,024 UP 3:00 AM Lhcx2 3,605 1,920 ‐ 5,586 1,382 ‐ 6,834 0,014 UP 6:00 AM Lhcx2 3,054 1,643 ‐ 4,515 1,166 ‐ 5,636 0,024 UP 9:00 AM Lhcx2 22,195 12,599 ‐ 37,881 8,060 ‐ 45,478 0,021 UP 3:00 AM Lhcx3 0,676 0,423 ‐ 1,024 0,377 ‐ 1,711 0,17
6:00 AM Lhcx3 0,264 0,122 ‐ 0,498 0,076 ‐ 0,689 0,012 DOWN 9:00 AM Lhcx3 35,088 13,958 ‐ 125,382 12,259 ‐ 190,532 0,005 UP 12:00 PM Lhcx3 13,025 8,875 ‐ 17,637 7,446 ‐ 24,632 0,001 UP 3:00 PM Lhcx3 4,972 2,418 ‐ 12,382 1,792 ‐ 18,816 0 UP 6:00 PM Lhcx3 5,388 3,183 ‐ 8,395 2,646 ‐ 11,726 0,006 UP 9:00 PM Lhcx3 6,884 4,965 ‐ 10,103 3,545 ‐ 12,840 0 UP 12:00 AM Lhcx3 11,725 7,642 ‐ 17,140 5,791 ‐ 23,948 0 UP
3:00 AM Lhcx3 1,402 0,943 ‐ 1,961 0,792 ‐ 2,742 0,154 6:00 AM Lhcx3 1,134 0,842 ‐ 1,603 0,747 ‐ 1,868 0,563 9:00 AM Lhcx3 15,552 6,987 ‐ 33,070 4,944 ‐ 46,192 0,015 UP 3:00 AM Lhcx4 0,837 0,437 ‐ 1,854 0,345 ‐ 3,192 0,66 6:00 AM Lhcx4 0,855 0,429 ‐ 1,739 0,248 ‐ 2,211 0,751 9:00 AM Lhcx4 1,307 0,715 ‐ 2,495 0,545 ‐ 3,647 0,55 12:00 PM Lhcx4 3,4 2,038 ‐ 5,831 1,503 ‐ 7,416 0,002 UP
3:00 PM Lhcx4 3,017 1,908 ‐ 4,433 1,527 ‐ 6,277 0,005 UP 6:00 PM Lhcx4 4,644 2,412 ‐ 11,180 2,009 ‐ 19,251 0,002 UP 9:00 PM Lhcx4 3,666 2,175 ‐ 5,598 1,769 ‐ 9,081 0,013 UP 12:00 AM Lhcx4 2,56 1,797 ‐ 3,663 1,450 ‐ 4,317 0,011 UP 3:00 AM Lhcx4 2,761 1,747 ‐ 4,457 1,249 ‐ 5,667 0,009 UP 6:00 AM Lhcx4 4,567 3,242 ‐ 6,514 2,601 ‐ 7,606 0,004 UP 9:00 AM Lhcx4 6,68 4,068 ‐ 11,471 2,974 ‐ 15,388 0,007 UP
Table A.10C,caption on page 140
Low LightHigh Light GeneExpressionStd. Error95% C.I.P(H1)ResultGeneExpressionStd. Error95% C.I.P(H1)Result 15minfcpB6,281,721 ‐ 22,8911,708 ‐ 23,0700UPfcpB0,230,180 ‐ 0,2980,170 ‐ 0,3150DOWN 30minfcpB6,691,835 ‐ 24,3951,825 ‐ 24,5310UPfcpB0,010,007 ‐ 0,0090,007 ‐ 0,0100DOWN 45minfcpB7,712,114 ‐ 28,1342,087 ‐ 28,4940UPfcpB0,010,003 ‐ 0,0080,002 ‐ 0,0080DOWN 60minfcpB7,772,129 ‐ 28,4002,061 ‐ 29,3160UPfcpB0,000,002 ‐ 0,0030,002 ‐ 0,0030DOWN 120minfcpB5,871,615 ‐ 21,7261,435 ‐ 24,1110UPfcpB0,000,002 ‐ 0,0030,002 ‐ 0,0030DOWN recov4hfcpB3,270,896 ‐ 11,9680,852 ‐ 12,5420,665fcpB0,020,003 ‐ 0,0780,003 ‐ 0,0820DOWN 15minLhcx11,010,734 ‐ 1,3850,725 ‐ 1,4020,688Lhcx18,394,599 ‐ 16,0183,803 ‐ 18,7380UP 30minLhcx11,210,890 ‐ 1,7110,736 ‐ 2,0020,515Lhcx14,712,772 ‐ 9,8541,785 ‐ 13,2260UP 45minLhcx10,830,606 ‐ 1,1570,536 ‐ 1,2890,336Lhcx13,661,998 ‐ 6,9381,708 ‐ 7,9280UP 60minLhcx10,750,548 ‐ 1,0470,485 ‐ 1,1670,498Lhcx13,032,266 ‐ 4,9621,736 ‐ 5,4920,337 120minLhcx10,370,282 ‐ 0,5460,213 ‐ 0,6760DOWNLhcx13,712,025 ‐ 7,0371,714 ‐ 8,1000UP recov4hLhcx10,090,066 ‐ 0,1250,060 ‐ 0,1350DOWNLhcx10,300,133 ‐ 0,9590,073 ‐ 1,3710,339 15minLhcx20,890,638 ‐ 1,2350,612 ‐ 1,2860,842Lhcx256,2351,382 ‐ 61,59150,030 ‐ 63,2070UP 30minLhcx21,000,728 ‐ 1,4270,622 ‐ 1,6320,839Lhcx250,1636,856 ‐ 68,34635,886 ‐ 70,1390UP 45minLhcx20,850,608 ‐ 1,1800,574 ‐ 1,2460,824Lhcx236,1829,274 ‐ 44,76828,504 ‐ 45,9430UP 60minLhcx20,800,577 ‐ 1,1130,570 ‐ 1,1270,834Lhcx220,4920,048 ‐ 20,96219,869 ‐ 21,1420UP 120minLhcx20,450,328 ‐ 0,6450,269 ‐ 0,7580,332Lhcx217,3416,423 ‐ 18,32115,991 ‐ 18,8010UP recov4hLhcx20,310,222 ‐ 0,4290,212 ‐ 0,4480,172Lhcx24,483,234 ‐ 6,2203,149 ‐ 6,3830UP,,,,,,,,,,, 15minLhcx30,970,831 ‐ 1,1430,746 ‐ 1,2580,489Lhcx3322,58240,077 ‐ 442,878211,659 ‐ 494,6020UP 30minLhcx31,090,938 ‐ 1,2760,936 ‐ 1,2790,839Lhcx3304,54229,016 ‐ 442,307174,746 ‐ 544,3550UP 45minLhcx30,820,705 ‐ 0,9640,675 ‐ 1,0060,329Lhcx3259,66192,495 ‐ 353,409177,831 ‐ 380,0970UP 60minLhcx30,840,719 ‐ 0,9830,688 ‐ 1,0260,503Lhcx3160,34134,347 ‐ 200,819121,287 ‐ 213,8800UP 120minLhcx30,600,512 ‐ 0,7050,453 ‐ 0,7860DOWNLhcx3120,8065,813 ‐ 242,17550,217 ‐ 298,0490UP recov4hLhcx30,540,464 ‐ 0,6320,453 ‐ 0,6460DOWNLhcx31,860,806 ‐ 4,6650,615 ‐ 5,7410,66 15minLhcx41,401,136 ‐ 1,7471,024 ‐ 1,9170UPLhcx41,260,939 ‐ 1,6980,866 ‐ 1,8290,675 30minLhcx41,531,238 ‐ 1,8971,160 ‐ 2,0170,169Lhcx43,602,542 ‐ 5,5501,954 ‐ 6,8010,174 45minLhcx41,961,589 ‐ 2,4391,467 ‐ 2,6250,16Lhcx43,232,410 ‐ 4,3332,355 ‐ 4,4300,341 60minLhcx41,731,404 ‐ 2,1601,258 ‐ 2,3810UPLhcx41,361,146 ‐ 1,6961,038 ‐ 1,8040,337 120minLhcx41,220,998 ‐ 1,5460,836 ‐ 1,7920,486Lhcx40,710,533 ‐ 0,9650,491 ‐ 1,0410,504 recov4hLhcx41,100,890 ‐ 1,3650,825 ‐ 1,4630,665Lhcx45,353,876 ‐ 8,0332,979 ‐ 9,8440UP
Table A.10D,caption on page 140
B. Author Contributions
Chapter 2
First induced plastid genome mutations in an alga with secondary plastids: psbAmutations in the diatomPhaeodactylum tricornutum(Bacillariophyceae) reveal consequences on the reg-ulation of photosynthesis
Arne C. Materna*, Sabine Sturm*, Peter G. Kroth and Johann Lavaud†
*A. C. Materna and S. Sturm contributed equally to this work.
†Corresponding author, e-mail: johann.lavaud@univ-lr.fr
Conceived and designed the experiments: ACM PGK JL. Performed the experiments: ACM SS JL. Analyzed the data: ACM SS PGK JL. Wrote the manuscript: ACM JL.
Chapter 3
High light photoacclimation of diatom psbA (D1 protein) mutants with an impaired linear electron transport
Sabine Sturm*, Arne C. Materna*, Stefanie Bürger, Sascha Vugrinec, Peter G. Kroth and Johann Lavaud†
*S. Sturm and A. C. Materna contributed equally to this work.
†Corresponding author, e-mail: johann.lavaud@univ-lr.fr
Conceived and designed the experiments: JL. Performed the experiments: SS ACM SB SV JL. Analyzed the data: SS JL. Wrote the manuscript: JL.
Chapter 4
Silencing of the diadinoxanthin de-epoxidase (DDE) gene inPhaeodactylum tricornutum and its consequence on the physiology of the cells
Arne C. Materna*, Johann Lavaud*, Sabine Sturm, Sascha Vugrinec and Peter G. Kroth†
*A. C. Materna and J. Lavaud contributed equally to this work.
†Corresponding author, e-mail: peter.kroth@uni-konstanz.de
Conceived and designed the experiments: ACM JL PGK. Performed the experiments: ACM JL SS SV. Analyzed the data: ACM JL PGK. Wrote the manuscript: ACM JL PGK.
Chapter 5
Investigations on transformants ofPhaeodactylum tricornutum overexpressing the diadinoxan-thin de-epoxidase (DDE)
Sabine Sturm†, Katrin Leinweber, Peter G. Kroth and Johann Lavaud
†Corresponding author, e-mail: sabine.sturm@uni-konstanz.de
Conceived and designed the experiments: SS PGK JL. Performed the experiments: SS KL.
Analyzed the data: SS KL JL. Wrote the manuscript: SS.
Chapter 6
Evolution, cellular localization and dependent transcription of members of the light-harvesting complex (LHC) protein superfamily in the diatom Phaeodactylum tricornutum Sabine Sturm*,†, Johannes Engelken*, Ansgar Gruber*, Sascha Vugrinec, Iwona Adamska, Peter G. Kroth and Johann Lavaud
*S. Sturm, J. Engelken and A. Gruber contributed equally to this work.
†Corresponding author, e-mail: sabine.sturm@uni-konstanz.de
Conceived and designed the experiments: SS JE AG IA PGK JL. Performed the experiments:
SS JE AG SV JL. Analyzed the data: SS JE AG JL. Wrote the manuscript: SS JE AG.
Chapter 7
Expression of the Lhcx genes under various light conditions inP. tricornutum Sabine Sturm†, Peter G. Kroth and Johann Lavaud
†Corresponding author, e-mail: sabine.sturm@uni-konstanz.de
Conceived and designed the experiments: SS PGK JL. Performed the experiments: SS. Ana-lyzed the data: SS JL. Wrote the manuscript: SS.
C. List of Publications
2009
Materna A,Sturm S, Kroth PG and Lavaud J (2009) First induced plastid genome mutations in an alga with secondary plastids: psbAmutations in the diatom Phaeodactylum tricornutum (Bacillariophyceae) reveal consequences on the regulation of photosynthesis. Journal of Phy-cology45: 838–846.
doi:10.1111/j.1529-8817.2009.00711.x
D. Dank
Ich danke allen, die zur Entstehung dieser Arbeit beigetragen haben! Insbesondere:
Prof. Peter Kroth, für die hervorragende Betreuung, das stete Interesse an meiner Arbeit, die konstruktiven Vorschläge, sowie den freundschaftlichen Umgang und die Freiheiten, die ich während meiner Arbeit geniessen durfte.
Prof. Iwona Adamska, für die stets unkomplizierte Zusammenarbeit und die Bereitschaft zur Be-gutachtung dieser Arbeit.
Dr. Johann Lavaud, thank you very much for giving me the opportunity to work on this interesting topic and for the excellent supervision, especially in times where immediate help was needed, be it for preparing talks or writing scientific manuscripts.
Allen Mitgliedern der AG Kroth, für die schöne Zeit und die gute Arbeitsatmosphäre. Ganz be-sonders danken möchte ich hier Ansgar Gruber und Caro Río Bártulos, die stets ein offenes Ohr für meine Probleme hatten und mir mit Rat und Tat zur Seite standen, sowie für die hilfreichen Vorschläge und Kommentare. Ausserdem danke ich Sascha Vugrinec, für die immer unterhaltsamen Gespräche abseits der Wissenschaft und die freundschaftliche Zusammenarbeit.
Den Studenten, die ich betreuen durfte und von denen ich viel gelernt habe.
Den Mitgliedern der AG Adamska, für die stets gute Zusammenarbeit und die immer offenen Türen zu ihren Laboren.
Ich danke meinen Freunden und meiner Familie für die Unterstützung, vor allem:
Matthias, danke für dein stets offenes Ohr, die zahlreichen Ratschläge und die wundervolle Zeit in der Markgrafenstraße.
Tine, was wäre aus mir nur ohne dich im vergangenen Jahr geworden? Ein ziemlich einsames Huhn vermutlich. Ich danke dir, für die Freundschaft und die Dauerbetreuung und Unterstützung in allen Lebenslagen.
Arne, danke für das rege Interesse an meiner Arbeit, auch wenn du Konstanz schon lange verlassen hast, für die Freundschaft und deinen Optimismus, durch den du mir immer den Glauben geschenkt hast, dass ich alles schaffen kann was ich mir vorgenommen habe.
Nadine und Christian mit Amelie und Pauline, danke für die wundervollen, ausgleichenden Urlaube, die wir miteinander verbracht haben und von denen wir hoffentlich noch ein paar gemeinsam verbringen werden und dafür, dass ihr mich immer daran erinnert, dass es sich lohnt weiter zu kämpfen.
Mein ganz besonderer Dank gilt meinem Mann Christian, ohne dessen fortwährende Unterstützung, Verständnis und Liebe diese Arbeit nie entstanden wäre.
Vielen Dank!
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