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General references

Im Dokument Sulfoquinovose degradation in bacteria (Seite 105-116)

Aoki, M., N. Sato, A. Meguro and M. Tsuzuki (2004). "Differing involvement of sulfoquinovosyl diacylglycerol in photosystem II in two species of unicellular cyanobacteria." Eur. J. Biochem. 271: 685-693.

Ashburner, M., C. A. Ball, J. A. Blake, D. Botstein, H. Butler, J. M. Cherry, A. P. Davis, K. Dolinski, S. S. Dwight, J. T. Eppig, M. A. Harris, D. P. Hill, L. Issel-Tarver, A.

Kasarskis, S. Lewis, J. C. Matese, J. E. Richardson, M. Ringwald, G. M. Rubin and G. Sherlock (2000). "Gene ontology: tool for the unification of biology. The gene ontology consortium." Nat. Genet. 25: 25-29.

Attene-Ramos, M. S., E. D. Wagner, M. J. Plewa and H. R. Gaskins (2006). "Evidence that hydrogen sulfide is a genotoxic agent." Mol. Cancer Res. 4: 9-14.

Autry, A. R. and J. W. Fitzgerald (1990). "Sulfonate S: A major form of forest soil organic sulfur." Biol. Fert. Soils 10: 50-56.

Baba, T., T. Ara, M. Hasegawa, Y. Takai, Y. Okumura, M. Baba, K. A. Datsenko, M.

Tomita, B. L. Wanner and H. Mori (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol. Syst. Biol. 2:

2006.0008.

Barber, J. and K. Gounaris (1986). "What role does sulpholipid play within the thylakoid membrane?" Photosynth. Res. 9: 239-249.

Benning, C. (1998). "Biosynthesis and function of the sulfolipid sulfoquinovosyl diacylglycerol." Annu. Rev. Plant Biol. 49: 53-75.

Benning, C. (2007). "Questions remaining in sulfolipid biosynthesis: a historical perspective." Photosyn. Res. 92: 199-203.

Benning, C., J. T. Beatty, R. C. Prince and C. R. Somerville (1993). "The sulfolipid sulfoquinovosyldiacylglycerol is not required for photosynthetic electron transport in Rhodobacter sphaeroides but enhances growth under phosphate limitation." Proc.

Natl. Acad. Sci. U.S.A. 90: 1561-1565.

Benning, C. and C. R. Somerville (1992A). "Isolation and genetic complementation of a sulfolipid-deficient mutant of Rhodobacter sphaeroides." J. Bacteriol. 174: 2352-2360.

Benning, C. and C. R. Somerville (1992B). "Identification of an operon involved in sulfolipid biosynthesis in Rhodobacter sphaeroides." J. Bacteriol. 174: 6479-6487.

Benson, A. A. (1963). "The plant sulfolipid." Adv. Lipid Res. 1: 387-394.

Benson, A. A., H. Daniel and R. Wiser (1959). "A sulfolipid in plants." Proc. Natl. Acad.

Sci. U.S.A. 45: 1582-1587.

Benson, A. A. and I. Shibuya (1961). "Sulfocarbohydrate metabolism." Fed. Proc. 20: 79.

Blattner, F. R., G. Plunkett, 3rd, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J.

Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau and Y. Shao (1997). "The complete genome sequence of Escherichia coli K-12." Science 277: 1453-1462.

Bradford, M. M. (1976). "A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding." Anal. Biochem. 72:

248-254.

Brüggemann, C., K. Denger, A. M. Cook and J. Ruff (2004). "Enzymes and genes of taurine and isethionate dissimilation in Paracoccus denitrificans." Microbiology 150:

805-816.

Chen, C., E. M. Bauske, G. Musson, R. Rodriguez-Kabana and J. W. Kloepper (1995).

"Biological control of Fusarium wilt on cotton by use of endophytic bacteria." Biol.

Control 5: 83-91.

Cleland, W. W. (1982). "The use of pH studies to determine chemical mechanisms of enzyme-catalyzed reactions." Methods Enzymol. 87: 390-405.

Commission, J. (1952). "Opinion 5: conservation of the generic name Pseudomonas Migula 1894 and designation of Pseudomonas aeruginosa (Schroeter) Migula 1900 as type species." Int. Bull. Bacteriol. Nomencl. Taxon 2: 121-122.

Cook, A. M. (1987). "Biodegradation of s-triazine xenobiotics." FEMS Microbiol. Rev. 46:

93-116.

Cook, A. M. (1998). "Sulfonated surfactants and related compounds: facets of their desulfonation by aerobic and anaerobic bacteria." Tenside Surfactant. Deterg. 35: 52-56.

Cook, A. M. and K. Denger (2002). "Dissimilation of the C2 sulfonates." Arch. Microbiol.

179: 1-6.

Cook, A. M., H. Laue and F. Junker (1999). "Microbial desulfonation." FEMS Microbiol.

Rev. 22: 399-419.

Cook, A. M., T. H. Smits and K. Denger (2007). Sulfonates and organotrophic sulfite metabolism. Microbial Sulfur Metabolism. C. Dahl and C. G. Friedrich. Berlin, Springer: 170-183.

Cornish-Bowden, A. (1981). "Thermodynamic aspects of glycolysis." Biochem. Educ. 9:

133-137.

Daddaoua, A., T. Krell and J. L. Ramos (2009). "Regulation of glucose metabolism in Pseudomonas: the phosphorylative branch and Entner-Doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain." J. Biol. Chem. 284:

21360-21368.

del Castillo, T., J. L. Ramos, J. J. Rodríguez-Herva, T. Fuhrer, U. Sauer and E. Duque (2007). "Convergent peripheral pathways catalyze initial glucose catabolism in Pseudomonas putida: genomic and flux analysis." J. Bacteriol. 189: 5142-5152.

Denger, K. and A. M. Cook (2010). "Racemase activity effected by two dehydrogenases in sulfolactate degradation by Chromohalobacter salexigens: purification of (S)-sulfolactate dehydrogenase." Microbiology 156: 967-974.

Denger, K., T. Huhn, K. Hollemeyer, D. Schleheck and A. M. Cook (2012).

"Sulfoquinovose degraded by pure cultures of bacteria with release of C3 -organosulfonates: complete degradation in two-member communities." FEMS Microbiol. Lett. 328: 39-45.

Denger, K., S. Lehmann and A. M. Cook (2011). "Molecular genetics and biochemistry of N-acetyltaurine degradation by Cupriavidus necator H16." Microbiology 157: 2983-2991.

Denger, K., J. Mayer, M. Buhmann, S. Weinitschke, T. H. Smits and A. M. Cook (2009).

"Bifurcated degradative pathway of 3-sulfolactate in Roseovarius nubinhibens ISM via sulfoacetaldehyde acetyltransferase and (S)-cysteate sulfolyase." J. Bacteriol. 191:

5648-5656.

Denger, K., T. H. Smits and A. M. Cook (2006). "L-cysteate sulpho-lyase, a widespread pyridoxal 5'-phosphate-coupled desulphonative enzyme purified from Silicibacter pomeroyi DSS-3T." Biochem. J. 394: 657-664.

Denger, K., M. Weiss, A. K. Felux, A. Schneider, C. Mayer, D. Spiteller, T. Huhn, A. M.

Cook and D. Schleheck (2014). "Sulphoglycolysis in Escherichia coli K-12 closes a gap in the biogeochemical sulphur cycle." Nature 507: 114-117.

Dodgson, K. S. and F. F. White (1983). "Some microbial enzymes involved in the biodegradation of sulphated surfactants." Top. Enz. Ferment. Biotechnol. 7: 90-155.

Dong, W., P. Eichhorn, S. Radajewski, D. Schleheck, K. Denger, T. P. Knepper, J. C.

Murrell and A. M. Cook (2004). "Parvibaculum lavamentivorans converts linear alkylbenzenesulfonate (LAS) surfactant to sulfophenylcarboxylates, ,-unsaturated sulfophenylcarboxylates and sulfophenyldicarboxylates, which are degraded in communities." J. Appl. Microbiol. 96: 630-640.

Dos Santos, V. A., S. Heim, E. R. Moore, M. Stratz and K. N. Timmis (2004). "Insights into the genomic basis of niche specificity of Pseudomonas putida KT2440." Environ.

Microbiol. 6: 1264-1286.

Durham, B. P., S. Sharma, H. Luo, C. B. Smith, S. A. Amin, S. J. Bender, S. P. Dearth, B. A. Van Mooy, S. R. Campagna, E. B. Kujawinski, E. V. Armbrust and M. A.

Moran (2015). "Cryptic carbon and sulfur cycling between surface ocean plankton."

Proc. Natl. Acad. Sci. U.S.A. 112: 453-457.

Entner, N. and M. Doudoroff (1952). "Glucose and gluconic acid oxidation of Pseudomonas saccharophila." J. Biol. Chem. 196: 853-862.

Erdlenbruch, B. N., D. P. Kelly and J. C. Murrell (2001). "Alkanesulfonate degradation by novel strains of Achromobacter xylosoxidans, Tsukamurella wratislaviensis and Rhodococcus sp., and evidence for an ethanesulfonate monooxygenase in A.

xylosoxidans strain AE4." Arch. Microbiol. 176: 406-414.

Essigmann, B., S. Güler, R. A. Narang, D. Linke and C. Benning (1998). "Phosphate availability affects the thylakoid lipid composition and the expression of SQD1, a gene required for sulfolipid biosynthesis in Arabidopsis thaliana." Proc. Natl. Acad. Sci.

U.S.A. 95: 1950-1955.

Euzéby, J. (2005). "Validation of publication of new names and new combinations previously effectively published outside the IJSEM." Int. J. Syst. Evol. Micobiol. 55:

2235-2238.

Felux, A. K., K. Denger, M. Weiss, A. M. Cook and D. Schleheck (2013). "Paracoccus denitrificans PD1222 utilizes hypotaurine via transamination followed by spontaneous desulfination to yield acetaldehyde and, finally, acetate for growth." J. Bacteriol. 195:

2921-2930.

Felux, A. K., P. Franchini and D. Schleheck (2015A). "Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1." Stand. Genomic Sci.

10: 42.

Felux, A. K., D. Spiteller, J. Klebensberger and D. Schleheck (2015B). "Entner-Doudoroff pathway for sulfoquinovose degradation in Pseudomonas putida SQ1." Proc. Natl.

Acad. Sci. U.S.A.: early edition, doi: 10.1073/pnas.1507049112.

Field, D., G. Garrity, T. Gray, N. Morrison, J. Selengut, P. Sterk, T. Tatusova, N.

Thomson, M. J. Allen, S. V. Angiuoli, M. Ashburner, N. Axelrod, S. Baldauf, S.

Ballard, J. Boore, G. Cochrane, J. Cole, P. Dawyndt, P. De Vos, C. DePamphilis, R. Edwards, N. Faruque, R. Feldman, J. Gilbert, P. Gilna, F. O. Glöckner, P.

Goldstein, R. Guralnick, D. Haft, D. Hancock, H. Hermjakob, C. Hertz-Fowler, P. Hugenholtz, I. Joint, L. Kagan, M. Kane, J. Kennedy, G. Kowalchuk, R.

Kottmann, E. Kolker, S. Kravitz, N. Kyrpides, J. Leebens-Mack, S. E. Lewis, K.

Li, A. L. Lister, P. Lord, N. Maltsev, V. Markowitz, J. Martiny, B. Methe, I.

Mizrachi, R. Moxon, K. Nelson, J. Parkhill, L. Proctor, O. White, S. A. Sansone, A. Spiers, R. Stevens, P. Swift, C. Taylor, Y. Tateno, A. Tett, S. Turner, D.

Ussery, B. Vaughan, N. Ward, T. Whetzel, I. San Gil, G. Wilson and A. Wipat (2008). "The minimum information about a genome sequence (MIGS) specification."

Nat. Biotechnol. 26: 541-547.

Field, R. A. and J. H. Naismith (2003). "Structural and mechanistic basis of bacterial sugar nucleotide-modifying enzymes." Biochemistry 42: 7637-7647.

Finn, R. D., A. Bateman, J. Clements, P. Coggill, R. Y. Eberhardt, S. R. Eddy, A. Heger, K. Hetherington, L. Holm, J. Mistry, E. L. Sonnhammer, J. Tate and M. Punta (2014). "Pfam: the protein families database." Nucleic Acids Res. 42: D222-D230.

Flamholz, A., E. Noor, A. Bar-Even, W. Liebermeister and R. Milo (2013). "Glycolytic strategy as a tradeoff between energy yield and protein cost." Proc. Natl. Acad. Sci.

U.S.A. 110: 10039-10044.

Fuhrer, T., E. Fischer and U. Sauer (2005). "Experimental identification and quantification of glucose metabolism in seven bacterial species." J. Bacteriol. 187: 1581-1590.

Garrity, G. M., J. A. Bell and T. Lilburn (2005). Order IX. Pseudomonadales. Bergey's Manual of Systematic Bacteriology, second edition, part B. G. M. Garrity, D. J.

Brenner, N. R. Krieg and J. T. Staley. New York, Springer. 2: 323.

Garrity, G. M., J. A. Bell and T. Lilburn (2005). Phylum XIV. Proteobacteria phyl. nov.

Bergey's Manual of Systematic Bacteriology, second edition, part B. G. M. Garrity, D.

J. Brenner, N. R. Krieg and J. T. Staley. New York, Springer. 2: 1.

Giordano, M., A. Norici and R. Hell (2005). "Sulfur and phytoplankton: acquisition, metabolism and impact on the environment." New Phytol. 166: 371-382.

Gomes, N. C., I. A. Kosheleva, W. R. Abraham and K. Smalla (2005). "Effects of the inoculant strain Pseudomonas putida KT2442 (pNF142) and of naphthalene contamination on the soil bacterial community." FEMS Microbiol. Ecol. 54: 21-33.

Gorzynska, A. K., K. Denger, A. M. Cook and T. H. Smits (2006). "Inducible transcription of genes involved in taurine uptake and dissimilation by Silicibacter pomeroyi DSS-3T." Arch. Microbiol. 185: 402-406.

Graham, D. E., H. Xu and R. H. White (2002). "Identification of coenzyme M biosynthetic phosphosulfolactate synthase: a new family of sulfonate biosynthesizing enzymes." J.

Biol. Chem. 277: 13421-13429.

Güler, S., B. Essigmann and C. Benning (2000). "A cyanobacterial gene, sqdX, required for biosynthesis of the sulfolipid sulfoquinovosyldiacylglycerol." J. Bacteriol. 182: 543-545.

Güler, S., A. Seeliger, H. Härtel, G. Renger and C. Benning (1996). "A null mutant of Synechococcus sp. PCC7942 deficient in the sulfolipid sulfoquinovosyl diacylglycerol." J. Biol. Chem. 271: 7501-7507.

Guo, S., G. J. S. Bluth, W. I. Rose, I. M. Watson and A. J. Prata (2004). "Re-evaluation of SO2 release of the 15 June 1991 Pinatubo eruption using ultraviolet and infrared satellite sensors." Geochem., Geophys., Geosysts. 5.

Gutiérrez Acosta, O. B., D. Schleheck and B. Schink (2014). "Acetone utilization by sulfate-reducing bacteria: draft genome sequence of Desulfococcus biacutus and a proteomic survey of acetone-inducible proteins." BMC Genomics 15: 584.

Haft, D. H., J. D. Selengut and O. White (2003). "The TIGRFAMs database of protein families." Nucleic Acids Res. 31: 371-373.

Hamilton, W. A. (1985). "Sulphate-reducing bacteria and anaerobic corrosion." Annu. Rev.

Microbiol. 39: 195-217.

Hanekamp, S., E. Bloem and E. Schnug (2008). History of sulfur deficiency in crops.

Sulfur: a missing link between soils, crops and nutrition. J. Jez. Madison, WI, American Society of Agronomy.

Harwood, J. L. and R. G. Nicholls (1979). "The plant sulpholipid - a major component of the sulphur cycle." Biochem. Soc. Trans. 7: 440-447.

Heinz, E. (1993). Recent investigations on the biosynthesis of the plant sulfolipid. Sulfur nutrition and assimilation in higher plants: regulatory, agricultural and environmental aspects L. J. De Kok, Stulen, I., Rennenberg, H., Brunold, C., Rauser, W. E. The Hague, SPB Academic Publishing: 163-178.

Heinz, E., H. Schmidt, M. Hoch, K. H. Jung, H. Binder and R. R. Schmidt (1989).

"Synthesis of different nucleoside 5'-diphospho-sulfoquinovoses and their use for studies on sulfolipid biosynthesis in chloroplasts." Eur. J. Biochem. 184: 445-453.

Hunter, S., R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bork, U.

Das, L. Daugherty, L. Duquenne, R. D. Finn, J. Gough, D. Haft, N. Hulo, D.

Kahn, E. Kelly, A. Laugraud, I. Letunic, D. Lonsdale, R. Lopez, M. Madera, J.

Maslen, C. McAnulla, J. McDowall, J. Mistry, A. Mitchell, N. Mulder, D. Natale, C. Orengo, A. F. Quinn, J. D. Selengut, C. J. Sigrist, M. Thimma, P. D. Thomas, F. Valentin, D. Wilson, C. H. Wu and C. Yeats (2009). "InterPro: the integrative protein signature database." Nucleic Acids Ressearch 37: D211-D215.

Huxtable, R. J. (1986). Biochemistry of sulfur. Biochemistry of the elements. E. Frieden.

New York and London, Plenum Press: 121-197.

Huxtable, R. J. (1992). "Physiological actions of taurine." Physiol. Rev. 72: 101-163.

Hyatt, D., G. L. Chen, P. F. Locascio, M. L. Land, F. W. Larimer and L. J. Hauser (2010). "Prodigal: prokaryotic gene recognition and translation initiation site identification." BMC Bioinformatics 11: 119.

Jiménez, J. I., B. Miñambres, J. L. García and E. Díaz (2002). "Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440." Environ. Microbiol.

4: 824-841.

Kanehisa, M., S. Goto, Y. Sato, M. Furumichi and M. Tanabe (2012). "KEGG for integration and interpretation of large-scale molecular data sets." Nucleic Acids Res.

40: D109-D114.

Kappler, U., B. Bennett, J. Rethmeier, G. Schwarz, R. Deutzmann, A. G. McEwan and C. Dahl (2000). "Sulfite:Cytochrome c oxidoreductase from Thiobacillus novellus.

Purification, characterization, and molecular biology of a heterodimeric member of the sulfite oxidase family." J. Biol. Chem. 275: 13202-13212.

Kavanagh, K. L., H. Jörnvall, B. Persson and U. Oppermann (2008). "Medium- and short-chain dehydrogenase/reductase gene and protein families: the SDR superfamily:

functional and structural diversity within a family of metabolic and regulatory enzymes." Cell. Mol. Life Sci. 65: 3895-3906.

Kennedy, S. I. T. and C. A. Fewson (1968). "Enzymes of the mandelate pathway in bacterium N.C.I.B. 8250." Biochem. J. 107: 497-506.

Kertesz, M. A. and P. Mirleau (2004). "The role of soil microbes in plant sulphur nutrition."

J. Exp. Bot. 55: 1939-1945.

Kuriyama, I., K. Musumi, Y. Yonezawa, M. Takemura, N. Maeda, H. Iijima, T. Hada, H. Yoshida and Y. Mizushina (2005). "Inhibitory effects of glycolipids fraction from spinach on mammalian DNA polymerase activity and human cancer cell proliferation." J. Nutr. Biochem. 16: 594-601.

Laemmli, U. K. (1970). "Cleavage of structural proteins during the assembly of the head of bacteriophage T4." Nature 227: 680-685.

Langmead, B. and S. L. Salzberg (2012). "Fast gapped-read alignment with Bowtie 2." Nat.

Methods 9: 357-359.

Loubinoux, J., J. P. Bronowicki, I. A. Pereira, J. L. Mougenel and A. E. Faou (2002).

"Sulfate-reducing bacteria in human feces and their association with inflammatory bowel diseases." FEMS Microbiol. Ecol. 40: 107-112.

Lowe, T. M. and S. R. Eddy (1997). "tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence." Nucleic Acids Res. 25: 955-964.

Magrane, M. and U. Consortium (2011). "UniProt Knowledgebase: a hub of integrated protein data." Database 43: bar009.

Mampel, J., E. Maier, T. Tralau, J. Ruff, R. Benz and A. M. Cook (2004). "A novel outer-membrane anion channel (porin) as part of the putatively two-component transport system for p-toluenesulfonate in Comamonas testosteroni T-2." Biochem. J. 383: 91-99.

Markowitz, V. M., I. M. Chen, K. Palaniappan, K. Chu, E. Szeto, M. Pillay, A. Ratner, J. Huang, T. Woyke, M. Huntemann, I. Anderson, K. Billis, N. Varghese, K.

Mavromatis, A. Pati, N. N. Ivanova and N. C. Kyrpides (2014). "IMG 4 version of the integrated microbial genomes comparative analysis system." Nucleic Acids Res.

42: D560-D567.

Martelli, H. L. (1967). "Oxidation of sulphonic compounds by aquatic bacteria isolated from rivers of the Amazon region." Nature 216: 1238-1239.

Martelli, H. L. and A. A. Benson (1964). "Sulfocarbohydrate metabolism. I. Bacterial production and utilization of sulfoacetate." Biochim. Biophys. Acta 93: 169-171.

Martelli, H. L. and S. M. Souza (1970). "Biochemistry of sulfonic compounds. III.

Formation of a two-carbon compound during the oxidation of sulfoacetate by a Pseudomonas strain." Biochim. Biophys. Acta 208: 110-115.

Mavromatis, K., N. N. Ivanova, I. M. Chen, E. Szeto, V. M. Markowitz and N. C.

Kyrpides (2009). "The DOE-JGI standard operating procedure for the annotations of microbial genomes." Stand. Genomic. Sci. 1: 63-67.

Mayer, J. and A. M. Cook (2009). "Homotaurine metabolized to 3-sulfopropanoate in Cupriavidus necator H16: enzymes and genes in a patchwork pathway." J. Bacteriol.

191: 6052-6058.

Mayer, J., T. Huhn, M. Habeck, K. Denger, K. Hollemeyer and A. M. Cook (2010). "2,3-Dihydroxypropane-1-sulfonate degraded by Cupriavidus pinatubonensis JMP134:

purification of dihydroxypropanesulfonate 3-dehydrogenase." Microbiology 156: 1556 -1564.

Meyer, B. H., B. Zolghadr, E. Peyfoon, M. Pabst, M. Panico, H. R. Morris, S. M.

Haslam, P. Messner, C. Schaffer, A. Dell and S. V. Albers (2011). "Sulfoquinovose synthase - an important enzyme in the N-glycosylation pathway of Sulfolobus acidocaldarius." Mol. Microbiol. 82: 1150-1163.

Migula, W. (1894). "Über ein neues System der Bakterien." Arb. Bakteriol. Inst. Karlsruhe 1:

235-238.

Mizusawa, N. and H. Wada (2012). "The role of lipids in photosystem II." Biochim.

Biophys. Acta 1817: 194-208.

Molina, L., C. Ramos, E. Duque, M. C. Ronchel, J. M. García, L. Wyke and J. L. Ramos (2000). "Survival of Pseudomonas putida KT2440 in soil and in the rhizosphere of plants under greenhouse and environmental conditions." Soil Biol. Biochem. 32: 315-321.

Müller, N., B. M. Griffin, U. Stingl and B. Schink (2008). "Dominant sugar utilizers in sediment of Lake Constance depend on syntrophic cooperation with methanogenic partner organisms." Environ. Microbiol. 10: 1501-1511.

Nelson, K. E., C. Weinel, I. T. Paulsen, R. J. Dodson, H. Hilbert, V. A. Martins dos Santos, D. E. Fouts, S. R. Gill, M. Pop, M. Holmes, L. Brinkac, M. Beanan, R. T.

DeBoy, S. Daugherty, J. Kolonay, R. Madupu, W. Nelson, O. White, J. Peterson, H. Khouri, I. Hance, P. Chris Lee, E. Holtzapple, D. Scanlan, K. Tran, A.

Moazzez, T. Utterback, M. Rizzo, K. Lee, D. Kosack, D. Moestl, H. Wedler, J.

Lauber, D. Stjepandic, J. Hoheisel, M. Straetz, S. Heim, C. Kiewitz, J. A. Eisen, K. N. Timmis, A. Dusterhoft, B. Tummler and C. M. Fraser (2002). "Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440." Environ. Microbiol. 4: 799-808.

Nikel, P. I., E. Martínez-García and V. Lorenzo (2014). "Biotechnological domestication of pseudomonads using synthetic biology." Nat. Rev. Microbiol. 12: 368-379.

Norman, H. A., C. F. Mischke, B. Allen and J. S. Vincent (1996). "Semi-preparative isolation of plant sulfoquinovosyldiacylglycerols by solid phase extraction and HPLC procedures." J. Lipid Res. 37: 1372-1376.

Ohji, S., A. Yamazoe, A. Hosoyama, K. Tsuchikane, T. Ezaki and N. Fujita (2014). "The complete genome sequence of Pseudomonas putida NBRC 14164T confirms high intraspecies variation." Genome Announc. 2: e00029-00014.

Okazaki, Y., M. Shimojima, Y. Sawada, K. Toyooka, T. Narisawa, K. Mochida, H.

Tanaka, F. Matsuda, A. Hirai, M. Y. Hirai, H. Ohta and K. Saito (2009). "A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis." Plant Cell 21: 892-909.

Perkins, D. N., D. J. Pappin, D. M. Creasy and J. S. Cottrell (1999). "Probability-based protein identification by searching sequence databases using mass spectrometry data."

Electrophoresis 20: 3551-3567.

Postgate, J. R. (1965). "Recent advances in the study of the sulfate-reducing bacteria."

Bacteriol. Rev. 29: 425-441.

Pruesse, E., C. Quast, K. Knittel, B. M. Fuchs, W. Ludwig, J. Peplies and F. O. Glöckner (2007). "SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB." Nucleic Acids Res. 35: 7188-7196.

Pugh, C., A. B. Roy, G. F. White and J. L. Harwood (1997). How is sulfolipid metabolised? Physiology, Biochemistry and Molecular Biology of Plants. J. P.

Williams, M. U. Khan and N. W. Lem. The Netherlands, Kluwer, Dordrecht: 104-106.

Pugh, C. E., A. B. Roy, T. Hawkes and J. L. Harwood (1995). "A new pathway for the synthesis of the plant sulpholipid, sulphoquinovosyldiacylglycerol." Biochem. J. 309:

513-519.

Rein, U., R. Gueta, K. Denger, J. Ruff, K. Hollemeyer and A. M. Cook (2005).

"Dissimilation of cysteate via 3-sulfolactate sulfo-lyase and a sulfate exporter in Paracoccus pantotrophus NKNCYSA." Microbiology 151: 737-747.

Rennberg, H. (1984). "The fate of excess sulfur in higher plants." Ann. Rev. Plant Physiol.

35: 121-153.

Roy, A. B., A. J. Ellis, G. F. White and J. L. Harwood (2000). "Microbial degradation of the plant sulpholipid." Biochem. Soc. Trans. 28: 781-783.

Roy, A. B., M. J. E. Hewlins, A. J. Ellis, J. L. Harwood and G. F. White (2003).

"Glycolytic breakdown of sulfoquinovose in bacteria: a missing link in the sulfur cycle." Appl. Environ. Microbiol. 69: 6434-6441.

Ruff, J., K. Denger and A. M. Cook (2003). "Sulphoacetaldehyde acetyltransferase yields acetyl phosphate: purification from Alcaligenes defragrans and gene clusters in taurine degradation." Biochem. J. 369: 275-285.

Sacoman, J. L., L. N. Badish, T. D. Sharkey and R. I. Hollingsworth (2012). "The metabolic and biochemical impact of glucose 6-sulfonate (sulfoquinovose), a dietary sugar, on carbohydrate metabolism." Carbohydr. Res. 362: 21-29.

Saito, N., M. Robert, H. Kochi, G. Matsuo, Y. Kakazu, T. Soga and M. Tomita (2009).

"Metabolite profiling reveals YihU as a novel hydroxybutyrate dehydrogenase for alternative succinic semialdehyde metabolism in Escherichia coli." J. Biol. Chem.

284: 16442-16451.

Sanda, S., T. Leustek, M. J. Theisen, R. M. Garavito and C. Benning (2001).

"Recombinant Arabidopsis SQD1 converts UDP-glucose and sulfite to the sulfolipid head group precursor UDP-sulfoquinovose in vitro." J. Biol. Chem. 276: 3941-3946.

Sato, Y., H. Nishihara, M. Yoshida, M. Watanabe, J. D. Rondal, R. N. Concepcion and H. Ohta (2006). "Cupriavidus pinatubonensis sp. nov. and Cupriavidus laharis sp.

nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines." Int. J. Syst. Evol.

Microbiol. 56: 973-978.

Schleheck, D., W. Dong, K. Denger, E. Heinzle and A. M. Cook (2000). "An -proteobacterium converts linear alkylbenzenesulfonate (LAS) surfactants into sulfophenylcarboxylates, and linear alkyldiphenyletherdisulfonate surfactants into sulfodiphenylethercarboxylates." Appl. Environ. Microbiol. 66: 1911-1916.

Schleheck, D., T. P. Knepper, K. Fischer and A. M. Cook (2004). "Mineralization of individual congeners of linear alkylbenzenesulfonate (LAS) by defined pairs of heterotrophic bacteria." Appl. Environ. Microbiol. 70: 4053-4063.

Schmidt, A., N. Müller, B. Schink and D. Schleheck (2013). "A proteomic view at the biochemistry of syntrophic butyrate oxidation in Syntrophomonas wolfei." PLoS One 8: e56905.

Shibuya, I. and A. A. Benson (1961). "Hydrolysis of sulfo-quinovosides by alpha-galactosidase " Nature 192: 1186-1187.

Shibuya, I., T. Yagi and A. A. Benson (1963). Sulfonic acids in algae. Japanese Society of Plant Physiologists: Studies on microalgae and photosynthetic bacteria. Tokyo, Japan, The University of Tokyo Press: 627-636.

Shimojima, M. (2011). "Biosynthesis and functions of the plant sulfolipid." Prog. Lipid Res.

50: 234-239.

Sörbo, B. (1987). "Sulfate: turbidimetric and nephelometric methods." Meth. Enzymol. 143:

3-6.

Strickland, T. C. and J. W. Fitzgerald (1983). "Mineralization of sulfur in sulfoquinovose by forest soils." Soil Biol. Biochem. 15: 347-349.

Sugimoto, K., N. Sato and M. Tsuzuki (2007). "Utilization of a chloroplast membrane sulfolipid as a major internal sulfur source for protein synthesis in the early phase of sulfur starvation in Chlamydomonas reinhardtii." FEBS Lett. 581: 4519-4522.

Tamura, K., G. Stecher, D. Peterson, A. Filipski and S. Kumar (2013). "MEGA6:

Molecular Evolutionary Genetics Analysis version 6.0." Mol. Biol. Evol. 30: 2725-2729.

Tatusov, R. L., M. Y. Galperin, D. A. Natale and E. V. Koonin (2000). "The COG database: a tool for genome-scale analysis of protein functions and evolution." Nucleic Acids Res. 28: 33-36.

Thoden, J. B., J. Kim, F. M. Raushel and H. M. Holden (2003). "The catalytic mechanism of galactose mutarotase." Protein Sci. 12: 1051-1059.

Thurnheer, T., T. Köhler, A. M. Cook and T. Leisinger (1986). "Orthanilic acid and analogues as carbon sources for bacteria: growth physiology and enzymic desulphonation." J. Gen. Microbiol. 132: 1215-1220.

Thysse, G. J. and T. H. Wanders (1974). "Initial steps in the degradation of n-alkane-1-sulphonates by Pseudomonas." Antonie Van Leeuwenhoek 40: 25-37.

Timmis, K. N. (2002). "Pseudomonas putida: a cosmopolitan opportunist par excellence."

Environ. Microbiol. 4: 779-781.

Trevisan, V. (1889). "I generi e le specie delle batteriacee, Zanaboni and Gabuzzi, Milan." 1-35.

Vairavamurthy, A., W. Q. Zhou, T. Eglinton and B. Manowitz (1994). "Sulfonates - A novel class of organic sulfur-compounds in marine sediments." Geochim. Cosmochim.

Acta 58: 4681-4687.

Wackett, L. P. (2003). "Pseudomonas putida - a versatile biocatalyst." Nat. Biotechnol. 21:

136-138.

Wagner, F. C. and E. E. Reid (1931). "The stability of the carbon-sulfur bond in some aliphatic sulfonic acids." J. Am. Chem. Soc. 53: 3407-3413.

Wallace, J. L., L. Vong, W. McKnight, M. Dicay and G. R. Martin (2009). "Endogenous and exogenous hydrogen sulfide promotes resolution of colitis in rats."

Gastroenterology 137: 569-578.

Ward, P. G., M. Goff, M. Donner, W. Kaminsky and K. E. O'Connor (2006). "A two step chemo-biotechnological conversion of polystyrene to a biodegradable thermoplastic."

Environ. Sci. Technol. 40: 2433-2437.

Weinitschke, S., K. Denger, A. M. Cook and T. H. Smits (2007). "The DUF81 protein TauE in Cupriavidus necator H16, a sulfite exporter in the metabolism of C2

sulfonates." Microbiology 153: 3055-3060.

Weiss, M., K. Denger, T. Huhn and D. Schleheck (2012). "Two enzymes of a complete degradation pathway for linear alkylbenzenesulfonate (LAS) surfactants: 4-sulfoacetophenone Baeyer-Villiger monooxygenase and 4-sulfophenylacetate esterase in Comamonas testosteroni KF-1." Appl. Environ. Microbiol. 78: 8254-8263.

Winslow, C. E., J. Broadhurst, R. E. Buchanan, C. Krumwiede, L. A. Rogers and G. H.

Smith (1917). "The families and genera of the bacteria: preliminary report of the committee of the society of american bacteriologists on characterization and classification of bacterial types." J. Bacteriol. 2: 505-566.

Woese, C. R., O. Kandler and M. L. Wheelis (1990). "Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya." Proc. Natl.

Acad. Sci. U.S.A. 87: 4576-4579.

Yu, B. and C. Benning (2003). "Anionic lipids are required for chloroplast structure and function in Arabidopsis." Plant J. 36: 762-770.

Yu, B., C. Xu and C. Benning (2002). "Arabidopsis disrupted in SQD2 encoding sulfolipid synthase is impaired in phosphate-limited growth." Proc. Natl. Acad. Sci. U.S.A. 99:

5732-5737.

Zerbino, D. R. and E. Birney (2008). "Velvet: algorithms for de novo short read assembly using de Bruijn graphs." Genome Res. 18: 821-829.

Zolghadr, B., B. Gasselhuber, M. Windwarder, M. Pabst, D. Kracher, M. Kerndl, S.

Zayni, A. Hofinger-Horvath, R. Ludwig, D. Haltrich, C. Oostenbrink, C.

Obinger, P. Kosma, P. Messner and C. Schäffer (2015). "UDP-sulfoquinovose formation by Sulfolobus acidocaldarius." Extremophiles 19: 451-467.

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