Supplementary Figure S2: Dispersion of raw and DESeq2 adjusted read counts about empirical mean for comparisons of triplicate RNA-seq data within A) control maize (Cn; Treatment T7) and Cry3Bb1 maize (VT3; T8), and C) control maize (Cn; T7) and Gpp34/Tpp35Ab1 maize (Hx; T5). MA-plots of Log2 transformed fold-change estimates and normalized mean read count are shown for B) control maize (Cn; Treatment T7) and Cry3Bb1 maize (VT3; T8), and D) control maize (Cn; T7) and Gpp34/Tpp35Ab1 maize (Hx; T5), with datapoints (change in transcript read counts) surpassing a Benjamini and Hochberg (1995) adjusted false discovery rate (FDR) of ≤ 0.05 shown in red.
Supplementary Figure S2:
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