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Description of Additional Supplementary Files File Name: Supplementary Movie 1

Description:

ActH fit in electron density map. Cryo-EM density map of ActH with fitted model rainbow- coloured from blue (N-terminus) to red (C-terminus).

File Name: Supplementary Movie 2 Description:

Quinol pocket and proton pathways in ACIII. Key residues identified in the ACIII structure are displayed sequentially. The quinol-binding site and respective entry channel are shown using surface representation, seen from the membrane and from the periplasm. Residues facing the interior of the corresponding four-helix bundle and proposed to form two half-channels in ActC and ActF are shown while slicing through the structure in a plane parallel to the membrane. Back at the central plane of the membrane, where the cytoplasmic and periplasmic half-channels meet, the conserved residues Glu122D, Ser245C and Tyr284F are positioned near Asp169C part of the quinol-binding site. Finally, the relative position of the residues listed above is observed from the membrane. Density for the side chains of Asp169C, Asp253C and Glu122D is not visible; these have been modelled. A yellow sphere indicates the location of the entry point to the quinol pocket. Subunits are coloured as in Fig.

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