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Suppl. Table 4: Number of SNPs at each QC stage (controls)PopulationOriginal number of SNPs Number of failing SNPsStage 1Stage 2

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Suppl. Table 4: Number of SNPs at each QC stage (controls)

Population Original

number of SNPs

Number of failing SNPs Stage 1 Stage 2

DE 247,870 1,585 712

FR 538,403 6,266 1,470

FIN 535,735 5,937 5,814

GR 538,403 7,618 3,423

ITA 547,589 8,194 10,184

NL (CoreExome 12.0) 534,682 3,412 11,127 NL (Exome 12.0) 239,525 4,712 1,308

NO 538,403 3,967 17,691

UK 538,448 11,070 4,661

USA 247,475 1,075 816

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