A GXXXA Motif in the Transmembrane Domain of the Ebola Virus Glycoprotein Is Required for Tetherin Antagonism
8.1. List of abbreviations
ADAM17 A disintegrin and metalloproteinase 17 ASGPR Asialoglycoprotein receptors
ASGPR-1 Asialoglycoprotein receptor-1
BDBV Bundibugyo virus
BOMV Bombali virus
BSL4 Biosecurity level 4
BST-2 Bone marrow stromal antigen 2 CARD caspase recruitment domains
CatB Cathepsin B
CatL Cathepsin L
CD209 Cluster of differentiation 209 CD317 Cluster of differentiation 317 CD4+ Cluster of differentiation 4
Cdc42 Cell division control protein 42 homolog CHIKV Chikungunya virus
DC-SIGN Dendritic cell-specific intercellular adhesion molecule-3-grabbing non-integrin
DENV Dengue virus
DNA Deoxyribonucleic acid
DRC Democratic Republic of Congo dsRNA Double-stranded ribonuclec acid
EBOV Ebola virus
EBOV-GP Ebola virus glycoprotein
EGFR Epidermal growth factor receptor
ER Endoplasmic reticulum
HIV-1 Human immunodeficiency virus 1
Appendix
114 HIV-2 Human immunodeficiency virus 2
hPIV-2 Human parainfluenza virus type 2
HR Heptad repeat
HSV Herpes simplex virus IAV Influenza A virus
ICAM-1 Intercellular cell adhesion molecule-1 IFITM Interferon-induced transmembrane protein LGP2 Laboratory of Genetics and Physiology 2
LLOV Lloviu virus
LPS Lipopolysaccharide
LRR Leucine-rich repeats
LSECtin Liver and lymph node sinusoidal endothelial cell C-type lectin L-SIGN Lymph node-specific intercellular adhesion molecule-3-grabbing
integrin
MARV Marburg virus
MAVS Mitochondrial antiviral signaling protein
MD Middle domain
MD5A Melanoma differentiation-associated protein 5 MERS Middle east respiratory syndrome
MFG-E8 Milk fat globule-epidermal growth factor-factor 8 MGL Macrophage galactose C-type lectin
MLD Mucin-like domain
MLV Murine leukemia viruses mRNA Messenger ribonucleic acid Mx Myxovirus resistance protein MyD88 Myeloid differentiation factor 88
Nedd4 Neural precursor cell expressed developmentally down-regulated protein 4
NF-κB Nuclear factor kappa-light-chain-enhancer of activated B cells
NHP Non-human primate
NK Natural killer
NLR NOD-like receptors
NOD Nucleotide-binding oligomerization domain
NP Nucleoprotein
Appendix PECAM-1 Platelet/endothelial cell adhesion molecule-1 PHEIC Public Health Emergency of International Concern PI3K Phosphatidylinositol 3-kinases
PKC Protein kinase C
PKR Protein kinase R
PRR Pattern recognition receptors PtdSer Phosphatidylserine
PTK Protein tyrosine kinase
PVEERs Phosphatidylserine-mediated virus entry enhancing receptors Rac1 Ras-related C3 botulinum toxin substrate 1
RAVV Ravn virus
RBD Receptor binding domain
RESTV Reston virus
RIG-I Retinoic acid-inducible gene-I RLR RIG-I-like receptor
RNA Ribonucleic acid
RNase L Ribonuclease L
RNP Ribonucleoprotein
Rsp5 Reversion of Spt phenotype
RT-PCR Reverse transcription polymerase chain reaction SARS-CoV Severe acute respiratory syndrome coronavirus sGP Soluble Glycoprotein
siRNA Small interfering ribonucleic acid SIV Simian immunodeficiency virus
SP Signal peptide
SSD Sterol sensing domain ssGP Small soluble Glycoprotein ssRNA Single-stranded ribonucleic acid
STAT Signal transducer and activator of transcription
SUDV Sudan virus
TACE Tumor necrosis factor alpha-converting enzyme TAFV Taï Forest virus
TAM Tyro-3, Axl, and Mer receptors TBK1 TANK-binding kinase 1
TGN Trans-Golgi network
TIM T-cell immunoglobulin and mucin-domain containing protein TIR Toll-IL-1 receptor
Appendix
116 TLR Toll-like receptor
TMD Transmembrane domain
TRAF TNF receptor-associated factor
TRIF TIR-domain-containing adaptor-inducing IFN- factor TRIM Tripartite motif protein
trVLP Transcription- and replication-competent virus-like particle Tsg101 Tumor susceptibility gene 101
TYK2 Tyrosine kinase 2
VCAM-1 Vascular cell adhesion molecule-1 VLP Virus-like particle
VP24 Viral protein with molecular mass of 24 kilodalton VP30 Viral protein with molecular mass of 30 kilodalton VP35 Viral protein with molecular mass of 35 kilodalton VP40 Viral protein with molecular mass of 40 kilodalton
Vpu Viral protein U
VSV Vesicular stomatitis virus
VSV-EBOV-GP Vesicular stomatitis virus with Ebola virus glycoprotein WHO World Health Organization
Appendix
117 8.2. Acknowledgements
First of all, I would like to thank Prof. Dr. Stefan Pöhlmann for giving me the opportunity to work on this project. I appreciate the valuable suggestions and your help during the whole course of my thesis.
I would like to thank the members of my thesis committee, Prof. Dr. Lutz Walter and Prof. Dr. Stephan Becker for their support and their ideas.
I would also like to thank Dr. Markus Hoffmann for his supervision, his constant support, advice and interesting discussions during my thesis.
I would like to thank the National Council on Science and Technology of Mexico (CONACYT), the DAAD and the MayaNet Project from the Erasmus Mundus partnership for financial support.
Thanks to all the members (current and former) of the Infection Biology Unit. You all made going to work fun. I really appreciate the kind and friendly atmosphere. Anna, Inga and Sabine thanks for all your help in the lab, I learned a lot from you. Kathrin thank you for all the help with the paper work before and during my stay in Germany.
Also, thanks to Heike for the advice and valuable comments on my thesis. Hannah, Lisa and Astrid, you made the time in the lab less boring and it was nice to have someone to joke around with. Thank you to the participants of the coffee breaks, Mario Kart parties and free German lessons, I had a lot of great moments.
A special thanks goes to Constantin for his support and patience particularly during the final phase of my thesis. But most importantly for making me laugh specially when times were tough.
Thanks to my friends in Mexico Erick, Karen, Lucero for all the cheering and being there for me even if we could only see each other once a year. Also, to Vero, Omar, Mario and Dr. Leopoldo for their support and help.
Finally, and most important I would like to thank my parents and my brother for all the support they have given me over the years, their love and cheering. Sin su apoyo no hubiera estado aquí. ¡Gracias, los quiero!
Appendix
118 8.3. Curriculum Vitae
Mariana González Hernández, M.Sc.
Born: 04. October 1988 in Mexico City, Mexico
E-Mail: mariana.gonzalezh@hotmail.com Academic Education
08/2015 - 03/2019 PhD within the Graduate School “Emerging Infectious Diseases” (EIDIS)
Georg-August University School of Science (GAUSS) Göttingen, Germany
Thesis “Interactions of the Ebola virus glycoprotein with host cell factors during viral entry and release”
Supervisor: Prof. Dr. Stefan Pöhlmann 08/2012 – 08/2014 M.Sc., Master in Health Science
Escuela Superior de Medicina - Instituto Politécnico Nacional Mexico City, Mexico
Thesis “Identification and validation of epitopes of Dengue virus serotypes for serological diagnosis”
Supervisors: Dr. Leopoldo Aguilar Faisal Dr. Adolfo Chávez Negrete Graduated with Honors
08/2007 – 12/2011 Bachelor in Biochemistry Engineering
Escuela Nacional de Ciencias Biológicas- Instituto Politécnico Nacional
Mexico City, Mexico
Thesis “Activation and retrieval of the four serotypes of Dengue virus and its identification using RT-PCR”
Supervisors: M.Sc. Verónica Alcántara Farfán M.Sc. Arturo Barbachano Guerrero 08/2004 – 07/2007 High School, Chemical Technician
Centro de Estudios Científicos y Tecnológicos No.6 Miguel Othón de Mendizábal-Instituto Politécnico Nacional
Mexico City, Mexico
Appendix
119 Honors and Awards
10/2015 – present Scholarship holder within the DAAD country-related cooperation program with the National Council on Science and Technology of Mexico (CONACYT)
08/2015 – 07/2018 The mobility scholarship within the MayaNet Project-Erasmus Mundus Action 2
08/2012 – 08/2014 Stipend recipient within the master’s degree program division from the National Council on Science and Technology of Mexico (CONACYT)
03/2013 – 09/2014 The scholarship for health research within the Research Development Division from the “Instituto Mexicano del Seguro Social (IMSS)”
02/2013 – 06/2014 02/2011 – 12/2011
Scholarship holder within the Institutional Program for
Training of Researchers (PIFI) from the “Instituto Politécnico Nacional (IPN)”
02/2005 – 12/2011 The Institutional scholarship from the “Instituto Politécnico Nacional (IPN)”