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Supplemental Material:

Supplemental Table 1: Summary of the number of biochemicals that reached statistical significance (p<0.05) or those that approached significance (0.05<p<0.10) across groups.

Supplemental Figure Legends :

Supplemental Figure 1: Changes in fatty acid metabolism with estrogen ablation. (A) Heat map showing effects of estrogens on fatty acid metabolites in mammary glands. (B) Differences in BHBA across groups. (p<0.05).

Supplemental Figure 2: Changes in membrane phospholipid metabolites. (A) Heat map showing differences in phospholipids across groups. (B) Heat map showing differences in the phosphatidylethanolamine species. (C) Heat map showing changes in phosphatidylcholine species. (D) Heat map showing changes in phosphatidylserine species. (E) Differences in glycophosphoinositol across groups. (F) Differences in choline phosphate across groups.

(p<0.05)

Supplemental Figure 3: Changes in cholesterol metabolites. (A) Heat map showing effects of estrogen on cholesterol metabolites in mammary glands. (B) Differences in7-alpha-hydroxy-3- oxo-4-cholestenoate (7-HOCA) metabolism across groups (p<0.05).

Supplemental Figure 4: Principal component analysis segregating mammary gland samples based on estrogen availability status (Ovary-intact (no-OVX) vs Ovariectomized (OVX)) and/or treatment after OVX (Untreated, CEE, or TAM). The samples displayed minimal separation based on both estrogen status and treatment post menopause in the PCA.

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