Additional File 3 — 16S rRNA phylogeny

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(1)Additional File 3 — 16S rRNA phylogeny Supplemental Figure 2: Sequence-based reconstruction of 16S rRNA phylogeny in LAB. The phylogenetic reconstruction was performed with RAxML using the GTR model with an optimization of substitution rates and the GAMMA model of rate heterogeneity. 1000 bootstrap iterations.. ac. ctob La. ct. Lactobacillus 7. Oen. Le. uco. La. s Pediococcu. ct ob La aci cto llu ba s cillu bife s rm re W eis W We en nnin se eis isse tan i D lla se lla s S pa lla jo DS M ra th ga M 20 m 2 2 no Weis W We ese aila ejeo 00 53 sto se e isse n nd tg 03 G oc c fa lla isse lla tero en ali G CF oc si C cu Con llax ory lla cib ide s G GC F 00 s ki Fru za ci ari s F 0 1 K O vi e ctob Fru taha en vi CT S bari a GC CF 00 014 436 Le uc ac ctob ra oc na C 3 G2 a GC F 0 003 193 345 50 on Fru illus ac e D occu inte 537 5 G GCF F 0 02 36 26 75 5.1 os st toc S ill Le Fr ctob ps us M s oe in G CF 0 013 386 325 15.1 .1 Le 0 ge eu i uc uc uc lid on toba acill do fruc 1733 ni GC CF 000 193 081 265 5.1 on um os os us ficul tosu 0 GC F 000 69 26 45 .1 ci Le to su toc ne s G F 00 1 18 95 .2 uc c llu tr bs p Leuc kim on citre s fic opae us GC CF 00323096656 05 .1 ga 00 7 .2 ul Le ch os uc Leuc sico onos ii IM toc um K neusoli GC F 00 02 64 57 5.1 5. G on F 79 os onos mita toc SN garli M20 G CF 00 10474105 5. 1 to Le c ps toc tum gelid U 11 cum G CF 00101047 09 5.1 1 uc C Le on eudo carn LMG um 154 GC F 000010 47 115.5.2 JB uc on ostoc mes osum 1881 7 GC F 00 00 4707135. 2 Le ostoc mes ente JB 1 GCF F 00 19982640 5.2 2 uc on mes ente roid 16 GGCF 00 0092 80 5.1 os es CF 00 0298 50 5.1 Weis W to ente roid Wei eiss c su roid es GCF 00030196 87 5.1 sella ssel ella ionicu es GCF 00 00 85 5.1 halot la ka m GCF 00232072 135.5.1 ole W ko nd Weis rans eisse reen leri GCF 0032 70 515. 1 G 41 1 sis 00 55 5. CF sella DSM lla so G 00 18 83 1 Weis viride 2019 li GCCF 00 14 9112 5.1 sc 0 se 29 38 5. Weis lla mi ens GCFF 0033 50 705. 1 En se no GC 00 53 695. 1 Enter teroc W occu eisse lla ce r GC F 90 1436 445. 1 oc s pla lla ce ti GC F 00 0216 865. 1 Enter occu oc s queb ntarumti GC F 00 1437 215. 1 Enter En oc 425.11 ococ teroc cus sileecensis GC F 00 073290 07 occu sia cus GC F 00 50 5.1 Enter Enter wang s termicus GC F 00 3236 535.1 oco shan 1886 205.1 tis F ccu ococ Enter s haem cus teryuanii GCF 001886 145.1 GC 00 225.1 Entero Enter ococcu opero mitis GC F 00 214067 xid s coc 21 oco Entero cus fae ccus ureasiticuus GC F 0018 9764 5.1 ureilyt coccus calis s GC F 00 8627 5.1 faecalATCC 292icus GC F 00 188598 5.1 1730 5.1 Ent Entero is F 12 coccus erococcusARO1 DG GCF 001730 285.1 hira rivorum GC 000742 315.1 F Entero e ATC GC 002814 975.1 C Entero coccus dur9790 GC F 001742 115.1 Enteroccoccus dur ans GC F 000271 285.1 Enteroco occus duraans GC F 001267 405.2 ccus ns GC F 001267 395.1 faec Ente F 865 Enteroco rococcus ium GCF 002277935 .1 ratti GCF 001721 .1 ccus Ente 001886 065.1 Enteroco rococcus faec faecium GCF 195 Enterococccus faecium ium DO GCF 00151873 .1 Aus0 5.1 cus 0001 Enterococcfaecium Aus0 085 GCF 0004 74395.2 004 4440 us faeciu m T110 GCF 00025094 5.1 Enterococc GCF 0007 5.1 us faeciu Enterococcu 37555.1 m Melissococcus pseudoavium GCF 003269465. GCF 00338 1 s plutoni Melissococcus plutonius us S1 GCF 00074 6455.1 DAT561 7585.1 Tetragenococcu Tetragenococcus s halophilus GCF 000283975.1 solitarius NBRC GCF 100494 GCF 001712815.1 Enterococcus 0015441 italicus DSM 15952 GCF 0001853695.1 Enterococcus saccharoly Enterococcus columbae ticus GCF 0018862355.1 DSM 7374 ATCC .1 51263 Enterococcus aquimarinus GCF 000373065.1 GCF Enterococcus gallinarum GCF 001885765.1 001886155.1 Enterococcus gallinarum EG2 GCF 000157255.1 Enterococcus casseliflavus EC20 GCF 000157355.2 Enterococcus asini GCF 001885725.1. illus. us. ill. ct La. c ba. o. 6. Family: Aerococcaceae. Carnobacteriaceae. Streptococcaceae. Enterococcaceae. Lactobacillaceae. Leuconostocaceae. discarded from 6S phylogeny (ﬁrst round). 1. 5.1 .2 40 75 05 5.1 5.1 00 20 69 08 16 00 008 051 000 5.1 F C 03 03 F 86 1 G 0 0 C .1 5. 28 s CF CF 6 G 845 5.1 04 20 93 nsi G G 17 847 .1 138 00 s s 9 F 01 oke ilu si 4 02 45 287 C 5.1 00 ko liph nien CC F 0 476 00 6 G 10 CF n T da lka go a A GC 028 CF 569 1543 a G a ta 1 0 G 1 aca us pa ctiv inis CF ns M F 00 ol10 1 145. 5. s efe gu G ra DS C -C lib 1 cc u a 17 43 5. G d n otg oco cc ia sa va civo la i 20-V 43 15 79 5.1 5.1 5.1 1 Je rich ocooph lla igna pau leoco seniS-1 15 F 001518 20 5.1 66 67 775. 1 T rich tr ate ia s co ten C F 00 GC 00 43 15 5. 24 21 60 63 T bio bic m ccu us ris A C A lo la co cc ch ae G cola GCF F 00 4328 1543 0004 00019001 F F G ack si co us urin ae ni ui GC 0015 F 00 GC GC GCF 5.1 F olo o cc s urin ui eq 27 ui F GC 6 5 D rem co cu s sang ae eq GC is 93 17 ea 03 E ero oc cu s in A eroc oc cu s ur inaeans min M 19 C 49 s 42 0030 5.1 A eroc oc cu s ur rid ho DS ATC eran CF 08 1 5. G 64 A eroc oc cu s vi inae ri ns otol A eroc oc cu s ur seile ce hr icus 0032 6400 5.1 32 6413 5.1 A eroc oc cu s adia psyc lit CF ov 00 A eroc oc occu la us ap 97 1 G F 32 1 A eroc iic atel ill oliv um GC F 00 3263 965. 1 1 5. 325. 825. 1 63 A avar lic ibac m pigr um GC 00 5.1 B ranu ilact teriu m pigr um GCF 0032 6391 0374 0744 185. 9373 32 00 00 0744 04 G arin ac nulu m gr CF F 00 5.1 M lkalib igra nulu m pi grum G CF 00 GCF GCF F 00 5.1 A olos igra nulu m pi grum G 7 48 GC i GC 4428 11 D olos igra nulu m pi grum 1581M 48 70 insky 0007 0744 00 M DS M 59 ich F D olos igra lu m pi GC GCF 975.2 D olos igranu lu is DS ile DS p gil D os ranu min mob itum subs FTR1 5972 45125.1000317 5.1 M F Dol losig is se rium fund ns ium 07 4437 Do lofust acte rium inhibe ocen um DS F 00 8 GC 0007 Al rnob acte rium pleist fundit 3 GC LMA2 GCF Ca rnob acte rium alter li MS ticum 4847 435.1 tga ma Ca rnob acte ium M 0258 Ca rnob acter ium jeo ltaro m DS F 90 5.1 Ca rnob acter ium ma llinaru s GC 3731 Ca rnob acter m ga ergen F 0033 98885.1 Ca rnob cteriu m div GC 0019 305.1 .1 Ca rnoba cteriu vialis GCF 2026 205.1 115 Ca rnoba us flu naei F 00 1870 001886 Ca gococc us pe rtis GC F 00 GCF 5.1 Va cocc s ma beri GCulicola 8580 .1 Vago coccu s teu oenic F 0018 216705 025.1 Vago coccu s ph is GC F 002 002290 go ccu 295.1 Va s can ndtii GC GCF 755.1 oco 001544 Enter ococcu s mu .1 dicus 001057 GCF Enter ococcu thailan GCF 003343305 491 Enter coccus avium GCF NBRC 100 025.1 886 Entero coccus gilvus avium .1 F 001 Entero coccus pseudo ratus GC 001832885 ero F Ent coccus malodo is GC 905.1 Entero coccus angens F 001832 441715.1 41885.1 845.1 0 GCF 0024 Entero cus pen icus GC GCF 002 260 Floricoc cus trop tarum is GCF 002 DSM 2233 Floricoc ccus plan ulitermit s CAU 28 5.1 Lactoco cus retic gangensi 00231047 Lactococ cus chun olactis GCF 55575.1 Lactococ cus raffin GCF 0023 Lactococ us garvieae Lactococc. Lactococcus petauri GCF 003433825.1 Agitococcus lubricus GCF 003051055.1 Lactococcus garvieae ATCC 49156 GCF 000269925.1 Lactococcus fujiensis JCM 16395 GCF 002441655.1 Lactococcus lactis GCF 000761115.1 Lactococcus lactis subsp lactis bv diacetylactis Lactococcus lactis GCF 002148215.1 Lactococcus lactis subsp lactis CV56 GCF 000192705.1 subsp cremoris Lactococcus MG1363 GCF 000009425.1 Lactococcus lactis subsp cremoris A76 GCF 00023647 Streptococcuslactis subsp cremoris 5.1 KW2 GCF Streptococcus agalactiae GCF 000468955.1 Streptococcus agalactiae GD201001275545.2 008-001 Streptococc agalactiae GCF 000299 A909 us GCF agalac Streptococ 135.1 00001 tiae Streptococ cus agalactiae GCF 002881315. 2705.1 2603V R 1 Streptococ cus agala GCF ctiae cus 00000 GCF 0007 Streptococ dysg 30255.1 7265.1 Streptoc cus dysg alactiae subs Streptoc occus dysg alactiae subs p equisimilis GGS alac p equis Streptoc occus phoc tiae 124 GCF ae GCF subsp equi imilis RE378 0000 Streptoc occus GCF 0003 10705.1 Streptoc occus phocae subs 00130226 similis AC-2 07185.1 713 GCF Streptoc occus iniae GCF p salmonis 5.1 00031785 000831 Strepto occus paraube GCF 5.1 000772 coccus paraub ris KCTC 485.1 Strepto 915.1 coccus uberis eris GC 11537 Strept GCF Strept ococcu salivar 0140J F 002900 000213 825.1 Strept ococcu s equinu ius CC GCF 000 385.1 009545 s GC HSS3 Strept ococcu s ves Strep ococcu s sal tibularis F 002073GCF 000 .1 GCF 515.1 253335 Strep tococc s sal ivarius 003 .1 iva Strep tococ us the rius GCF 002 438 tococ cus the rmop GCF 094 185.1 Strep cus rmop hilus CN 000448 975.1 tococ Strep the RZ10 685.2 rmop hilus Strep toc cus 66 Strep toc occus vestibu hilus GCF GC Strep toc occus gallo laris ASCC 001280 F 00 Stre toc occu paste lyticus ATCC 1275 285.1 0011845 GC .1 Stre ptocooccu s gallo urian subs 4912 St pto ccuss infan lyticu us AT p gallo 4 GC F 0006 inf tarius s GC CC 43 lyticu F 0001 98885.1 St reptoccocc 8829 St reptoc occuus ma antar GC F 00 144 s AT St reptoc occu s co ssilie ius su F 00 1477 GC CC 43 5.1 St reptoc occu s an nste nsis bsp 1477 575.1 F 0002 143 7016 GCF St reptoc oc s an ginosllatus DSM infan 615.1 0002 5.1 gin us subs 18 tarius St rept oc cus 7014 Strereptocococ cus ananginoosus GCF p ph628 GC CJ18 5.1 ar St pt oc cus 00 su C2 gi F GC St rept ococ cus inte nosu s su 38 GC0831 yngis 0003 F 165. C1 8006 0002 Strerept ococ cus inte rmed s C1 bsp F 05 46 oc 00 rm 0 GC 5.1 S 835.1 pt oc cu sine ed ius 05 wh 04 1 S trept ococ cu s cr ns iu B196 1 GCFileyi M 6350 F 00 AS 5. S trept ococ cu s go istatu is G s G 0463 G S trept oc cu s go rdon s AS CF CF 00 CF 0004 624 1 425. ii S trept oc occu s go rd 20 0004 6346 GC 1 00 1 F 00 5. S trept oc occu s go rd onii GC 30 0767 73 63 04 Str trept ocococcu s hi rd onii str F 00 89 G 835. 355.2 355. 1 78 1 S ep oc cu s m on G Cha 0970 CF 1 92 5.1 llis S trep to oc s mar alay ii G CF 66 0003 5. S trep to cocc cus az im en CF 0020 su 85 Str trep tocococc us aziz izii amm sis 0012 73 bstr 2 92 5.1 S ep to cc us cu ii GC al G C 81 43 S trep to co us m nicu GC F 00 ium CF 00 10 5.2 H1 GC 5. S tre to co ccus sa ar li F 19 D F 00 S tre pto co ccus pa ng mot GC 0019 84 SM 1708 1 S tre pto co cc 71 18 30 ra ui ae F 00 S tre pto co cc us pa sa nis G 00 8470 5.1 627 5.1 17 00 S tre pto co cc us infa rasa ng S CF 19 5. GC 5.1 S tre pto co cc us ora nt ng ui K36 00 2184 1 F 00 16 S tre pto co cc us p lis is ui nis Str tre pto co cc us pn seu G GC nis FW GCF 23 5.1 03 80 ep pto co cc us pn eu dop CF F 00 AT 21 00 565. 04 to co cc us pn eu mo ne 00 15 CC 3 G 00 1 5.1 co cc us pn eu m nia um 2 14 cc us pn eu m on e o 38 79641591 CF 20 00 5. us p e m on iae SP nia 63 2 pn neu um on iae G N0 e IS 45.1 5.1 GC 0262 1 eu m on iae ga CF 32 7 F 00 145. m on iae G m 0 67 49 3 0 P 01 on ia 1 2 C 64 ia e JJ GC F NI0 081 G GC 0 e 67 C AT A F 0 01 373 700 F F 0 5. 2 C GC 03 896 G 5.1 000 00 C 3 211 221 70 F 0 548 045 CF 07 98 06 00 25 .1 00 5.1 5.1 02 69 01 .1 99 G 898 01 C 5 5.1 F .1 00 00 26 66 5.1. 5.1 09 47 .1 01 65 00 .1 9 F 25 18 5.2 .1 C 7 0 6 G 51 00 43 5.1 5.1 65 B 033 F 0 001 5.1 697 98 192 0-6 0 GC 00 521 014 019 000 F 5 00 00 0 67 F 1 F 0 e GC 85 C 2 5. ia e 05 G 01 CF F GC 41 on ia 7 9 0 G GC -6 56 m on iae D3 CF 0 23 A eu m on e G 20 14 19 5.1 00 pn neu um onia iae AP SP ary 16 CF 5.1 us p e m on e CG ng 27 G 95 13 cc us pn eu m nia e Hu 00 us 5.1 58 co cc s pn eu o nia e 00 in 28 to co ccu s pn eum o ia F ur 00 5.1 87 01 5.1 ep pto co ccu us pn eum on GC tig CF 89 1 46 Str tre pto co cc us pn eum B6 bsp e G 60 025. 5.1 F 001 5.1 15 81 95 GC 5. 0187 1 S tre pto co cc us pn s su ia 74 5. S tre pto co cc us miti is on F 00 12 83 15 00 S tre pto co cc us oral m C 00 19 0780 53 CF 2376 0423 eu G CF 00 02 G 04 00 S tre pto co cc S tre pto co ccus pn itis G CF C 70 F 00 79 F 00 CF S tre to co ccus m itis G C GC 07 C 0 G 70 G 81 S trep to co us m alis AT S trep to cocc us or roris Uo5 CC 759 22 5.1 S ep to cc us pe is AT 23 SM 1 Str trep tocococc cus oral ntis SM m D 5220225. 1 33 85 S trep to oc s infa i D ru 5.1 5. S trep oc occu s porc exto F 00 32 8524 3192 1 S trept oc occu s ur GC F 00 32 02 575. 1 S trept oc occu s pl is GC F 00 F 00 33 905. S trept oc occu s su is GC GC 0002 31 S trept oc cu s su is F 0002 5.1 1 S trept ococ cu s su is ST GC CF 0382 5.1 5.1 24 S trept ococ cu s su is A7 2 G 28 52 3 00 2812 0390 S rept ococ cu su D1 355. St rept ococ cus suis GCF 00 CF 00 765.1 0168 St rept ococ cus suis GCF G 40 00 5.1 St rept ococ cus suis TL13 0016 GCF 0462 5.1 80105.1 F 8 35 02 is St pt oc s 03 5.1 Strereptoc occucus su is GCHAS6 F 00000732 F 00 8607 St reptoc oc s su is 05 3 GC F 7 GC 5.1 0002 F St ptoc occu s su is ST 07 GC 1561 3104 5.1 Strereptoc occu s su is 64 DSM 0014 564 GC009164 St reptoc occuus su atti GCF M 20 F 00 575.1 St ptoc cc orisr sini GC 0284 DS Stre ptoco ccuss orisa FA-1 2025 F 00 5.1 995.2 Stre ptocooccu s ratti s NN 23 GC 5821 5.1 0187 Stre toc occu mutan s LJ F 0015 9555 F 00 Strep toc occus mutan s GC F 0029 58 GC 5.1 Strep toc occus mutan s GC TC 115 164208 .2 Strep toc occus mutan e NC F 00 187975 .1 Strep .1 toc occus caca pis GC F 000 219765 .1 Strep toc cus ma ntholo -6 GC 172995 .1 F 000 765 Strep tococ us pa eti HS GCF 003 176795 .1 46 GC F 000020 C 352 Strep tococc s cric rinus 975 GC F 003 Strep ococcu s sob rinus GC F 003172 icus ATC CS10565 Strept ococcu s sob s GC epidem icus MG 125.1 ccu sobrinu sp zoo em Strept 380 oco epid s .1 Strept ococcu equi sub sp zoo GCF 000 377005 145.1 000 sub 16829 cus Strept 000380 equi GCF ptococ Stre ptococcus ovis DSM 17118 21 GCF .1 Stre occus minor DSM DSM 122 598035 20785.1 Streptoc occus thoraltensis GCF 001 9 GCF 0004 Streptoc occus halotolerans DSM 1221 53735.1 Streptoc occus 5.1 aginalis GCF 0029 Streptoc occus hyov nimalium GCF 00335299 79985.1 0003 Streptoc occus plura nimalium 4 GCF Streptoc ccus plura lli DSM 1900 1 5.1 Streptoco cus caba GCF 002770552 GCF 000007285. Streptococ cus canis 1 MGAS823 Streptococ cus pyogenes GCF 001014305. Streptococ us pyogenes GCF 001019635.1 535.1 Streptococc s pyogenes GCF 000307 125.1 Streptococcu pyogenes A20 GCF 000018 Streptococcus pyogenes NZ131 252 GCF 000250905.1 Streptococcus pyogenes MGAS15 5.2 Streptococcus ictaluri 707-05 GCF 00018801 000380005.1 Streptococcus didelphis DSM 15616 GCF 000425025.1 Streptococcus DSM 17536 GCF Streptococcus castoreus s LQ 940-04 GCF 000188035.1 Streptococcus pseudoporcinu GCF 002887775.1 Streptococcus penaeicida 001885095.1 Streptococcus bovimastitidis GCF Enterococcus pallens GCF 001886075.1 Enterococcus hermanniensis GCF 001885945.1 Enterococcus canintestini GCF 002269685.1. La ct La aci ob ct llu aci ob L s llu aci act sa s llu o La niv ct iri La rha s rh baci ob JC ct m a llu aci M ob no m s ct o llu 1 aci su nosu ca s La baci s 7 se ctob llu La bra 471 llus AT s L i 1 C ac s g cto nta D rha C c 7 2A illus ram ba e D SM mn 85 05 G in cillu SM 2 osu 30 G CF cu eq La rv is D s cu 23 430 s GC CF 00 uige Lact La at ctob La ctob us SM rva 92 1 G GC F 0 000 030 La nero obac 7 ct ctob si ill La ac ob acill CR 207 tus G CF F 00 002 026 95 us ct ill ac us L 19 G C 0 2 3 5 65 us ac D F 70 La illus SM ross obac fu illus sa 5 G CF 00 014 238 375 25.1 .2 ctob 18 ia ill ch sa ke G CF 00 14 37 03 5.1 ga La ac st 79 e D us ue ke i G CF 0 22 36 46 5.1 ctob La illus ricus3 JC SM silig nsis i G CF 00 014 24 11 5.1 ct C in ac 0 3 5 5 illus Lact obac ferm DS M 141581 is GC F 900022 23 641 05.1.1 57 ill en M fe ob 50 4 GC F 90 02 24 05 5.1 La rmen acill us fe tum 1604 5 GC F 00 02 34 56 .1 La ctob tum us fe rmen 3872 5 GGCF F 00 14 5845345.5.1 La La ctob acillu CE rmen tum G CF 00 04283743 5. 1 La ct ac CT tu C 00 14 ctob obac La ctob 92 5. 1 illu s ctob acillu s ferm 57 m GCF F 00 14343524 5. 1 ac illu fe en 16 G La illu 5. 1 00 04 ctob s in s ingl acillu s fermrmen tum GCCF 00 19 66 365. 1 acillu gluv uvie s fe 33 41 785. 1 en tum G F s co La iei st i DS rmen tum GCCF 000002 4679785. 3 1 10 M tu le ctob r F La ohom acillu Autru 1594 m GCF 00211742 515.5.1 cto G ba inis s in che 6 G CF 0028 92 205. 1 cil Lacto lus 101- gluv 4 G CF 0032 9965435. 1 1 00 ie 4Lacto ba secalip CH i G CF 00 14 5587 5.1 cil 35 Lacto ba lus hilusN G CF 00 0312 77 5.1 La bacil La ctoba cillus reuter GCCF 00 1437 40 5.1 La 5. re cto cil Lacto ctoba lus re bacil lus re uter i GC F 00 0161 235. 1 ute i GC F 00 1437 935. 1 lus bacil cillus uteri reu DSM reute ri GC F 00 3316 055. 1 lus La teri 16 89 1 F 20 ri Lactoctobacillreuter i AT JCM 016 GCF 0016 8868 5.1 Lacto bacill us reu CC 1112 GCF 0016 5749 5.2 53 ter ba us GC 00 18 5.1 Lacto cillus antri DS i SD21608 GC F 00 0016 905.1 panis M 82 Lac 00 ba 12 La F 16 tob GC 0002 1000 5.1 Lacto ctoba cillus F 00 36 5.1 Lactob acillus oris DSM 041 cill ba acillus vagina cillus fruus oris DSM 6035 GCF 00 0159 455.2 4864 GCF PB 01 455.2 me vagina lis DS M 583 nti DS 013-T2-3 GC 0014 60835.1 lis F LactobDSM 583 7 ATCCM 1314 GCF 0014 35935.1 3446 7 aci 495 5 GCF 000180 5.1 40 Lactob llus pon ATCC 00 01 acillus tis DS 49540 GCF 001143604 5.1 Lac Lactoba tobacil M GCF 5.1 lus vac Lactob mucosae 8475 000 435915 cillus 159 cinoster acillus LM GCF 435 .1 Lactoba suebicus cus DS mucosae1 GCF 001435345 .1 DSM cillus M 206 Lactoba GCF 000248 .1 hokkaid 5007 095 34 000 KCT cillu Lactobac s maleferm Lactobaonensis JCM C 3549 GCF 001 766905 .2 .1 436 GC illus male enta cillu 184 fermenta ns DSM 570 s wasatch 61 GCFF 000260 295.1 395.1 ensis 000 5 ns LactobacDSM 5705 KCTC 354 GCF 000 829395.1 Lacto 8 Lactobacill bacillus simil illus oryzae KCTC 3548 GCF 000 876205.1 260 is JCM GCF us odora DSM 775 titofui DSM 23365 JCM18671 GCF 00143639 .1 5.1 0007 1990 2765 Lactobacillu Lactobacill 9 JCM 1504 GCF 0014 40055.1 s collino ides DSM us pentosiphil 3 GCF 0014 36595.1 3489 us 20515 Lactob JCM 1123 GCF 00221798 5.1 GCF 00143 5.1 Lactobacillus acillus paracollinoide 5975. kimchicus s Lactobacillus JCM 15530 GCF 001702155.11 plantarum GCF 001433 subsp Lactobacillus plantarum GCF 001272 995.1 plantarum 315.2 GCF Lactobacillus plantarum GCF 003020005.1 Lactobacillus 0014840 05.1 plantarum Lactobacillus plantarum GCF 001675425.1 Lactobacillus paraplantarum GCF 001660645.1 GCF 001443645.1 Lactobacillus plantarum GCF 001302645.1 Lactobacillus herbarum GCF 001039045.1 Lactobacillus xiangfangensis GCF 001438845.1 Lactobacillus plantarum GCF 001278015.1 Lactobacillus plantarum GCF 002117245.1 Lactobacillus paraplantarum GCF 001660655.1 Lactobacillus plantarum GCF 002109405.1 002850015.1 Lactobacillus pentosus GCF 001704315.1 Lactobacillus plantarum GCF GCF 001659745.1 Lactobacillus plantarum 16 GCF 000412205.11 Lactobacillus plantarum GCF 003124125. Lactobacillus bambusae GCF 000237995.1 ATCC BAA-344 001767275.1 Pediococcus claussenii cus acidilactici GCF 002173575.1 Pediococ GCF acidilactici 001437075.1 Pediococcus 605.1 stilesii GCF Pediococcus inicus GCF 0014372325.1 argent 00192 Pediococcus acidilactici GCF 000014505.1 1 Pediococcus 25745 GCF 002173535. s ATCC s GCF 96265.1 s pentosaceu pentosaceu GCF 0004 38655.1 Pediococcu Pediococcus saceus SL4 0014 82135.1 ola GCF s pento cus cellic s GCF 0029 11155.1 Pediococcu Pediococ inopinatu GCF 0016 11075.1 s cus Pediococccus damnosu s GCF 0016611135.1 .1 001 Pedioco ccus damnosuus GCF 001611035 .1 nos GCF 001640785 .1 Pedioco ccus dam 935 F nosus Pedioco ccus dam ulus GC F 001436 465.1 185 GC parv ioco .1 Ped ccus rans GCF 000 437175 .1 Pedioco s fructivo 115 03 F 001 cillu M 202 s GC 001702 645.1 Lactoba3543 DS tivoran i GCF 001436 325.1 fruc F ner TC 225 945.1 s KC acillus llus lind 35 GC 000 tivoran Lactob tobaci M 160 4 GCF 001314 965.1 fruc JC 1 130 GCF Lac 2993 5.1 acillus i F 00 9400 5.1 22689s TMW kee Lactob kun kei GC F 0029 9397 5.1 DSM nsi llus 29 um rla sce GC 00 aci flor franci be e 1261 5.1 F tob Lac cillus timquenuiaeri GC F 0031 3599 5.2 acillus san ba en GC 0014 10 us Lactobtobacillus Lacto bacill us mich kosoi GCF 000785 555.1 Lac Lacto bacill cillus 196 GCF 001436 875.1 35 5.1 17 Lacto Lactoba JCM rieae GCF 0014 5931 5.1 F 2 cu 1 829 lus 1747 8 GC F 0001 3589 14 255. 1 M 23 bacil M DS Lacto 2 JC M 141090 GC F 00 1434 745.5.1 82 9 GC F 00 1766 57 1 30 JC ensis 24 oz 2 CC 10 GC 00 35 5. M us DS 1838 6 AT M 14 421 GCF 0014 3617 5.1 bacill ris M F 14 08 5.1 17 JC 14 ii Lacto senio is DS M 20 390 DSM sunk 4 GCCF 00 3131 02 5.1 gin DS 18 lus 00 22 s M oran cillus 199018 GGCF 0019 3414375.1 2 bacil farra rdii ba M Lacto cillus hilga is DS dioliv cto ii DS M 58 firi GCF 0014 11 115. 1 02 98 5. ba cillus ragin lus La ke JC ri nk CF 1 s 00 su 7 Lactoctoba rafar bacil illu chne 0 G CF 0002 3625 5. 1 58 La lus pa Lacto cillusM 20 ctobacrabu 1504 9 G CF 0014 4227095. 1 ba La s pa M 3092 4 G CF 0002 35 345.5.1 cto i DS bacil JC B14 17 La fir 03 G F 1 illu Lacto ac 908 RL CD 042 GC F 00 21 9306 5. 1 s ke ri 36 5. R C 00 5 ctob acillu La M 19 ri N chne M 15 43 9 G CF 00200469 46 5.1 1 ne 14 ctob JC is F0 42 is G CF 00 La is DSbuch s bu 7 00 2304 5. 1 G F ns 15 iens illus acillu1990 ne SM brev is GC F 00 19 7355805.5.1 ak so D ev C 00 1 ob s ot obac Lact DSM s ki heri illus br 054 7 G CF 00211676 51 5. 1 ac illu ct G CF 00 1437 43 5. 1 pi acillu spic ob illus 20 36 ac La 50 s ra ctob us Lact obac DSM CC evis is G CF 00 10 3712395.5.1 ctob ill F G illu ct br La 8 La ac ac La 869 is AT us brev is GC F 0000141434 47 05.1 .1 C ill 3 ctob ctob 14 brev ac illus brev is G CF 00 14 834 835 5.1 La La CC illus ctob ac illus brev sis s G CF 00 001 434 583 95.1 .1 ra G F AT is obac La ctobobac pa reen an 1 GC F 9 001 143 360 655 5.1 ev La ct us ko ivor 38 7 GC F 0 4 3 7 5.1 br Lact 0 01 66 23 2 ill us uc 16 11 C La F ac ill pa M 19 ae G C 0 01 74 64 illus m 94 G CF 0 01 70 ac ctob ac us DS M La ctobacill ii DS s zy 193 758 G CF F 0 002 ctob La ob mes sis llu M 17 35 G C F La ct m n aci S 03 ii G C La ha ure ctob e D SM M 2 back is G 1 a D m illus na La rin s DS llus iform 00 vu n 0 ac s difa ca us aci ry 2 llu ctob ci aci con rinic ob co SM ct s La oba D llu llus ext La bsp 7 ct aci ci s d La su 6 ob oba llu is 31 ct ci rm TC La Lact oba nifo KC ct ry La co rmis s llu nifo aci ry ob co ct La bsp su is rm nifo ry co s llu aci ob ct La ob. La. ac. La ct. Lactobacillus kimbladii GCF 000970755.1 Lactobacillus helsingborgensis GCF 003173695.1 Lactobacillus apis GCF 003150935.1 GCF 001042405.1 Lactobacillus acetotolerans GCF 001434515.1 DSM 5661 JCM 6256 Lactobacillus hamsteri GCF 002075105.1 Lactobacillus amylolyticus GCF 000091765.1 ST1 002849955.1 Lactobacillus crispatus helveticus GCF 001702095.1 Lactobacillus helveticus GCF 000422165.1 Lactobacillus CNRZ32 GCF 000961015.1 helveticus GCF Lactobacillus helveticus 002849915.1 Lactobacillus helveticus GCF 000015385.1 Lactobacillus DPC 4571 GCF 001308285.1 helveticus helveticus GCF 000189515.1 s 5.1 GCF Lactobacillus Lactobacillu ticus H10 GCF 00016577 5.2 2 1424 us helve Lactobacill helveticus R005 GCF 0013 34625.1 arum us 0009 5.1 Lactobacill bacillus gallinphilus GCF 00015941 .1 Lacto illus acido 7 GCF 000214785 .1 435 GCF Lactobac s DSM 1604 001434 115.1 ensi ns ZW3 illus ultun anofacie 1039 GCF 000194 545.1 Lactobac cillus kefir 61 JCM 1118 GCFF 000191 375.1 Lactoba is DSM 167 rus GRL rus GC F 002706 325.1 lovo lovo 435 kitasatoncillus amy cillus amy 20531 GC F 001 434335.1 .1 cillus GC M Lactoba Lactoba orus DS M 6629 GCF 001 296855 .1 Lactoba amylovstinalis DSM 16043 GCF 000 436575 .1 025 001 acillus inte s DS 24 85 GCF 000297 945.1 Lactob acillus BIP ixensi 85 F 88 Lactob acillus kal 08 CR BIP 24 76 GC F 0018 88925.1 239 CR 24 i GC 0018 835.1 Lactob DSM 23908 CRBIPlbruecki 6 GCF 000182 965.1 rum M gigerio rum DS M 23907 sp de 2604 GCF 001888 415.1 02 GCF erio 1908 805.1 acillus DS i sub DSM gig teurii lbruecki 7a-9 ricus NDnkii GCF 00 3351 065.1 Lactob acillus pas su 00 56 5.1 ZN bulga de bsp indicus GCF 0000 5313 5.1 Lactobtobacillus cillus obsenii i su bsp ba F us 19 Lac Lacto sp jak ckii su lbruecki subsp lgaric 02 GC F 00 200088 985.1 ue ii sub bu de ckii delbr cillus lbrueck bsp JCM 10 us GC F 00 1888 095.11 GC 00 78 5. ric lbrue cillus ba de ii su 2 lga us GCF 0022 4257 5.1 us de ctoba ric Lacto cillus lbrueck 1184 p bu La lga tis GCF 0021 8890 5.1 ba de bacill bs CC Lacto cillus us AT ckii su bsp bu p lac072 GCF 0018 8577 5.1 Lacto F ric ba 22 9116 5.1 ue ii su ii subs 20 Lacto p bulga delbr ueck ueckii DSM uecktis GC F 00 01 2590 5.1 lbr lus GC 00 lbr tis 04 1 bs delbrp lac p de p lac tis GCF 0004 42 235. 1 bacil lus de ii su ueck Lacto bacil bacillus subs ii subs ii subs p lac 38 GCF 00171936 125. 1 20 5. bs ii delbr Lacto Lacto ueck ueck ueck ii su icus 354 ii GCF 00 14360498 5.1 lus lbr delbr 15 en GCF 00 02 40 5.1 ck lgar bacil ue M F delbr de 91 lus cillus cillus delbr p bu i DS jens enii GC F 00 00 2839 5.1 Lacto bacil ctoba ctoba lus subs ittac illus jens 179 GC F 00 34 3669 5.1 1 cil kii s ps ac illus 24 26 GC 00 14 34 5. La ba Lacto La 60 85 GCF 00 2253 02 5.1 cto ruec acillu Lactob ac BIP 53 44 5.1 lb La CF 00 ctob R PC 97 i s de ctob La 0 C nii D nii FI soni 1 G CF 00222253 42 5.1 La 1 G F 14 91 so hn acillu 23 john hnso s jo 2140 sis GC F 00 00 5888905. 1 ctob 5. jo illu SM en s GC F 00 21 87 La 69 1 si DSM s s is acillu illu obac s D iwan en sis GC F 00 22 84 405.5.1 ac ct si ta an 1 C 00 28 min ob ob ct La anen us taiw anen 31 i G CF 00 01853633 5. .1 s ho La Lact 11 er G F ill 60 iw illu taiw obac illus ta JCM ss 9 GC F 000019 36 515535.1.1 ac 14 C ctob illus Lact obac illus 3 us ga 1486ers G CF 00 143 361 225 5.1 ac La ac ct ill in 5 G CF 00 14 36 70 5.1 La ctob 3332 ac DSM us 19 ctob G F 0 4 4 1 .1 La La CC ctob eri acill C 55 1125 2 GC F 0 001 143 366 745 5.1 C i AT La gass ctob ATC M 1651 6 G CF 00 014 433 905 15.1 .1 er La ers 3 JC M 610996 G CF F 0 01 82 22 25 ss illus ga in 53 JC 10 13 505 8 G C F 0 00 19 028 ac C 0 2 G illus illus 20 7 BR M 20 15 5 GC F 00 29 ctob ac ac SM 2303 N JC SM 17 99 4 GC F 00 La D M 39 8 D M 13 80 3 GC F ctob 9 ctob s C La La hilu DS 125 226 86 s JC M C 3 39 i G a si JC T C se i ylop ol M SM M 11 en 7 KC TC s ca se ca am ric JC s D JC asu 269 8 iA flo 5 n 2 17 se acillu llus illus us 94 nsi ae s ac acill 15 nde rpe cillu SM 20 ca ob baci ct a D M ctob ob SM aila sh ba e S bsp La cto La Lact s D s th s cto llia e D i su La ri llu La me a se he llu ci ca s ze ca nt aci ba s s pa ob cto llu cillu llu ct La illus La aci ba aci ob o b ct Lact acto La L. Lactobacillus kullabergensis GCF 003151025.1 Lactobacillus melliventris GCF 000970775.1 Lactobacillus composti DSM 18527 JCM 14202 GCF 001436375.1 Lactobacillus mellis GCF 000967245.1 Lactobacillus allii GCF Lactobacillus nodensis 001971585.1 Lactobacillus nantensis DSM 19682 JCM 14932 NBRC Lactobacillus crustorum DSM 16982 GCF 001435815. 107160 GCF 001435555.1 1 GCF 00195117 Lactobacillus 5.1 Lactobacillus mindensis DSM 14500 Lactobacillus heilongjiangensis GCF GCF 001434275.1 000831645.3 Lactobacillus paralimentarius Lactobacillus paralimentariu DSM 13961 JCM 10707 s GCF 001435 Lactobacillu paralimentariu DSM 13238 JCM 445.1 10415 Lactobacill s alimentarius s DSM 19674 GCF 00143 GCF 001434985.1 Lactobacill us kimchiensis DSM 20249 4855.1 GCF 00143 GCF 002849895. Lactobacil us futsaii 8805. 1 Lactobac lus farcim JCM 17355 GCF 0014 1 Lactobac illus vers inis KCTC 3681 3550 5.1 Lactobac illus vers moldensis DSM DSM 14857 20184 GCF Lactoba illus gins moldensis 00270674 KCTC Lactoba cillus tucc enosidim DSM 1485 3814 5.1 GCF Lactoba cillus pero eti DSM utans GCF 7 KCTC 00105047 3814 GCF 001434295.1 lens DSM20183 Lactoba cillus GCF 00026045 5.1 Lactob cillus harbinen 001 127 sis DSM 44 GCF 434665 5.1 Lactob acillus shenzhene .1 acillus harbin nsis 16991 GC001435585 Lac ensis LY-73 .1 Lac tobacillus anima DS GC F 001436 Lac tobacillus murinulis KCTC M 16991 F 000469 325.1 GCF 325.1 Lac tobacillus anima s GCF 3501 000 DS lis GC 003 Lactotobacillus apodem 288115 M 206 425885 02 GC .1 Lacto bacill rum i DS F 002 .1 F 001 Lacto bacill us sae inis AT M 166 894975 434535 Lacto bacill us av rimne CC 277 34 JC .1 .1 Lacto bacill us av iarius ri DSM 82 GC M 161 1604 F 000 72 GC Lacto bacill us av iarius GCF Lacto bacil us av iarius GCF 001654 9 GCF 22498 F 001 434 iarius GC 0016 565.1 0004 5.1 La ba lus 405 2326 .1 La ctoba cillus aviarius subs F 0016 54655.1 5.1 La ctoba cillus aviar su p av 5203 La ctoba cillus aviar ius GCbsp ara iarius 5.1 F 00 ffin DSM La ctoba cillus aviar ius 2065 1652 osus La ctoba cillus aviar ius GCF La ctoba cillus av ius GCF 0016 105.1 DSM 5 GC 2065 F La ctob cillus av iarius GC 0016 5204 3 GC001436 La ctob acillu av iarius GC F 0016 5205 5.1 5.1 F 00 315.1 52 La ctob acillu s po iarius GC F 00 1435 La ctob acillu s po buzih GC F 00 1652 145.1 375.1 2553 125. F La ctob acillu s ha bu ii 635. 1 La ctob acillu s sa yakitzihii GCF 0025 La ctob ac liv s en E100 00 5364 1 La ctob ac illus saliv ariu sis 30 1438 5.1 La ctob ac illus saliv ariu s G DS 1 KC 865. La ctob ac illus saliv ar s G CF M 18 TC 1 CF 0017 933 13 La ctob ac illus sa ar ius 23 La ctob ac illus sa livar ius GC 00 JC 174 La ctob ac illus sa livar ius str F 00 2162 525. M 14 GCF La ctob ac illus ag livar ius GC Ren 3316 055. 1 20 9 0003 La ct ac illus ce ilis ius UC F 90 GC 95 1 GCF 49 La ct obac ill G G C11 00 F 00 5.1 72 vi ti 94 5. La ct obac ill us ni DS CF CF 8 00 14 1 La ct obac ill us nage DS M 22 0022 00 GC 615. 1011 34 07 F 09 La ct ob ill us gh 1 45 lii M 40 5.1 5.1 La ctobobacacill us hordanen DS 2060 8 4037 5836 0000 L ct ei sis M 13 5 GC 5.1 5.1 0892 ill us m L act ob ac us m ali G F D D 5.1 L act ob aci illus ca ali KC SM S 67 CF 00 La act ob aci llus uv ca GC TC 19 M 18 5 G 00 1438 L ct ob aci llu a ar on F 35 51 63 CF 1435 78 T act ob aci llu s qu um um 00 96 9 5. 0 GC G 0014 395. 1 Tri rich ob aci llu s sucap atic D D 14 D C 37 ill S a s S ch oco ci llu o ci a us M M S F F 34 1 oco cc llu s sa en co tus D 19 21 155. M 20 0014 00 22 5. S 44 34 1435 1 cc us s alg ts i DS la D DS M 97 116 1 4 84 us flo id um M SM M 21 1 23 G GC 5. 5.1 pa cc us en 19 2 19 051 GC CF F 1 st ulif DS sis 97 13 910 G F 00 00 00 eu o M D 2 76 14 G CF 14 1436 rii rm 1 SM G C 36 G is 56 1 CF JCM F 0 001 3493 73 53 C G 38 62 0 5. F C 0 1 0 43 5. 5. 1 90 F G 30 14 54 143 675 1 1 00 90 CF JC 36 57 49 5.1 2 79 00 0 M 75 GC 15.1 13 67 01 1 .1 F 5.1 46 434 23 00 5.1 6 92 14 95 36 .1 GC 70 F 5.1 00 14 35 19 5.1. s1. ob a. illu. cil lu. c ba. s2. cto. La La. La ctob. ac. ri cte. e ea. ba rno s Ca ccu oco g a V. Lactococcus. Streptococcus.

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