Additional file 2: List of publications in the test library
Map 1: Agriculture as exposures and biodiversity as outcomes
1. Agele SO, Ewulo BS, Oyewusi IK. Effects of some soil management systems on soil physical properties, microbial biomass and nutrient distribution under rainfed maize production in a humid rainforest Alfisol. Nutrient Cycling in Agroecosystems.
2005;72(2):121-34.
2. Böhnert T, Wenzel A, Altenhövel C, Beeretz L, Tjitrosoedirdjo SS, Meijide A, Rembold K, Kreft H. Effects of land-use change on vascular epiphyte diversity in Sumatra (Indonesia). Biological Conservation. 2016 Oct 1;202:20-9.
3. Flores-Rentería D, Sánchez-Gallén I, Morales-Rojas D, Larsen J, Álvarez-Sánchez J.
Changes in the abundance and composition of a microbial community associated with land use change in a Mexican tropical rain forest. Journal of Soil Science and Plant Nutrition. 2020 Sep;20(3):1144-55.
4. Kerfahi D, Tripathi BM, Lee J, Edwards DP, Adams JM. The impact of selective-logging and forest clearance for oil palm on fungal communities in Borneo. PloS one. 2014 Nov 18;9(11):e111525.
5. Mendes-Oliveira AC, Peres CA, Maués PC, Oliveira GL, Mineiro IG, de Maria SL, Lima RC. Oil palm monoculture induces drastic erosion of an Amazonian forest mammal fauna. PloS one. 2017 Nov 8;12(11):e0187650.
6. Nkrumah EE, Opoku BA, Badu EK, Danquah E, Tschapka M, Oppong SK. Estimating bat abundance and diversity in a modified tropical environment in central Ghana. Tropical Ecology. 2017 Dec 1;58(4):751-9.
7. Panjaitan R, Drescher J, Buchori D, Peggie D, Harahap IS, Scheu S, Hidayay P. Diversity of butterflies (Lepidoptera) across rainforest transformation systems in Jambi, Sumatra, Indonesia. Biodiversitas Journal of Biological Diversity. 2020 Oct 13;21(11).
8. Perera P, Wijesinghe S, Dayawansa N, Marasinghe S, Wickramarachchi C. Response of tropical birds to habitat modifications in fragmented forest patches: A case from a tropical lowland rainforest in south-west Sri Lanka. Community Ecology. 2017 Aug;18(2):175-83.
9. Potapov AM, Klarner B, Sandmann D, Widyastuti R, Scheu S. Linking size spectrum, energy flux and trophic multifunctionality in soil food webs of tropical land-use systems. J Anim Ecol. 2019;88(12):1845–59.
10. Steffan-Dewenter I, Kessler M, Barkmann J, Bos MM, Buchori D, Erasmi S, et al.
Tradeoffs between income, biodiversity, and ecosystem functioning during tropical rainforest conversion and agroforestry intensification. Proc Natl Acad Sci USA.
2007;104(12):4973–8.
Map 2: Biodiversity as exposures and agriculture as outcomes
1. Ballauff J, Zemp DC, Schneider D, Irawan B, Daniel R, Polle A. Legacy Effects Overshadow Tree Diversity Effects on Soil Fungal Communities in Oil Palm-Enrichment Plantations. Microorganisms. 2020 Oct;8(10):1577.
2. Bisseleua DH, Missoup AD, Vidal S. Biodiversity conservation, ecosystem functioning, and economic incentives under cocoa agroforestry intensification. Conservation biology. 2009 Oct;23(5):1176-84.
3. Blanche KR, Ludwig JA, Cunningham SA. Proximity to rainforest enhances pollination and fruit set in orchards. Journal of applied ecology. 2006 Dec;43(6):1182-7.
4. Firn J, Erskine PD, Lamb D. Woody species diversity influences productivity and soil nutrient availability in tropical plantations. Oecologia. 2007 Dec 1;154(3):521-33.
5. Karp DS, Mendenhall CD, Sandí RF, Chaumont N, Ehrlich PR, Hadly EA, Daily GC. Forest bolsters bird abundance, pest control and coffee yield. Ecology letters. 2013 Nov;16(11):1339-47.
6. Kasina M, Kraemer M, Martius C, Wittmann D. Farmers' knowledge of bees and their natural history in Kakamega district, Kenya. Journal of Apicultural Research. 2009 Jan 1;48(2):126-33.
7. Klein AM. Nearby rainforest promotes coffee pollination by increasing spatio-temporal stability in bee species richness. Forest Ecology and Management. 2009 Oct 10;258(9):1838-45.
8. Olschewski R, Tscharntke T, Benítez PC, Schwarze S, Klein AM. Economic evaluation of pollination services comparing coffee landscapes in Ecuador and Indonesia. Ecology and Society. 2006 Jun 1;11(1).
9. Tuma J, Fleiss S, Eggleton P, Frouz J, Klimes P, Lewis OT, Yusah KM, Fayle TM. Logging of rainforest and conversion to oil palm reduces bioturbator diversity but not levels of bioturbation. Applied Soil Ecology. 2019 Dec 1;144:123-33.
10. Wu J, Zeng H, Zhao F, Chen C, Liu W, Yang B, Zhang W. Recognizing the role of plant species composition in the modification of soil nutrients and water in rubber agroforestry systems. Science of The Total Environment. 2020 Jun 25;723:138042.
