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3. MATERIALS AND METHODS

3.3. Immunhistology

3.3.2. Immunhistological stains

Antibody: Mouse anti-cytokeratin pan (clone: Lu5)

Provenance: Neomarkers Dunn Labortechnik GmbH, Asbach Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with Protease (see 3.3.1.3.1.) 4) Insert slides in Shandon Racks

5) Blocking serum for 10 min at room temperature, horse serum.

6) Incubate primary antibody over night at 4°C in the refrigerator

MATERIALS AND METHODS 47 Dilute the antibody in TBS with1 % BSA (see 3.3.1.4.)

7) Rinse 3 x 5 min in TBS buffer

8) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Horse anti-Mouse IgG (H+L)

Preparation: 9 µl for 1 ml TBS with 1 % BSA buffer 9) Rinse the sections 3 x 5 min in TBS buffer

10) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

11) Then as above (see 3.3.1.5.)

3.3.2.2. Vimentin

Antibody: Mouse anti-vimentin (clone V9)

Provenance: Dako Cytomalion GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Insert slides in Shandon Racks

4) Blocking serum for 10 min at room temperature, horse serum.

5) Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS with1 % BSA (see 3.3.1.4.)

6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Horse anti-Mouse IgG (H+L)

Preparation: 9 µl for 1 ml TBS with1 % BSA buffer 8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

MATERIALS AND METHODS 48 3.3.2.3. Actin

Antibody: Mouse anti-actin (clone HHF-35)

Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Insert slides in Shandon Racks

4) Blocking serum for 10 min at room temperature, horse serum.

5) Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS with 1 % BSA (see 3.3.1.4.)

6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Horse anti-Mouse IgG (H+L)

Preparation: 9 µl for 1 ml TBS with 1 % BSA buffer 8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

3.3.2.4. Desmin

Antibody: Mouse anti-desmin (clone D33)

Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Insert slides in Shandon Racks

4) Blocking serum for 10 min at room temperature, dilute horse serum 1:5 in TBS 20 min 5) Incubate primary antibody over night at 4°C in the refrigerator

Dilute the antibody in TBS (see 3.3.1.4.) 6) Rinse 3 x 5 min in TBS buffer

MATERIALS AND METHODS 49 7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Horse anti-Mouse IgG (H+L)

Preparation: 9 µl for 1 ml TBS buffer 8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

3.3.2.5. Neurofilament

Antibody: Mouse anti-neurofilament (clone 2F11) Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Insert slides in Shandon Racks

4) Blocking serum for 10 min at room temperature, horse serum.

Incubate primary antibody over night at 4°C in the refrigerator.

Dilute the antibody in TBS with 1 % BSA (see 3.3.1.4.) 5) Rinse 3 x 5 min in TBS buffer

6) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Horse anti-Mouse IgG (H+L)

Preparation: 9 µl for 1 ml TBS buffer 7) Rinse the sections 3 x 5 min in TBS buffer

8) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

9) Then as above (see 3.3.1.5.)

3.3.2.6. Glial fibrillary acidic protein (GFAP) Antibody: Rabbit anti-GFAP (rabbit polyclonal)

Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

MATERIALS AND METHODS 50 Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Insert slides in Shandon Racks

4) Blocking serum for 10 min at room temperature, swine serum Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS with 20% SS (see 3.3.1.4.)

5) Rinse 3 x 5 min in TBS buffer

6) Incubate the secondary antibody for 30 min at room temperature, Goat anti-Rabbit IgG Preparation: 9 µl for 1 ml TBS with 20% SS

7) Rinse the sections 3 x 5 min in TBS buffer

8) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl A+ 9 µl B dilute 1 ml TBS

9) Then as above (see 3.3.1.5.)

3.3.2.7. Melan A

Antibody: Mouse anti-melan A (clone A103)

Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with citrate (see 3.3.1.3.2.) 4) Insert slides in Shandon Racks

5) Blocking serum for 10 min at room temperature, horse serum Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS with 1 % BSA (see 3.3.1.4.) 6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Horse anti-Mouse IgG (H+L)

Preparation: 9 µl for 1 ml TBS buffer 8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer

MATERIALS AND METHODS 51 Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

3.3.2.8. Factor VIII

Antibody: Rabbit anti-factor VIII (rabbit polyclonal) Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with Protease (see 3.3.1.3.1.) 4) Insert slides in Shandon Racks

5) Blocking serum for 10 min at room temperature, swine serum Incubate primary antibody over night at 4°C in the refrigerator.

Dilute the antibody in TBS with 20% SS (see 3.3.1.4.) 6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Goat anti-Rabbit IgG

Preparation: 9 µl for 1 ml TBS with 20% SS 8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl A + 9 µl B dilute 1 ml TBS

10) Then as above (see 3.3.1.5.)

3.3.2.9. MHC II

Antibody: Mouse anti-human HLA-DR, alpha chain (clone TAL.1B5) Provenance: Dako Cytomation GmbH, Hamburg

Sections: Deparaffinized sections (see 3.3.1.1.) Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with citrate (see 3.3.1.3.2.) 4) Insert slides in Shandon Racks

MATERIALS AND METHODS 52 5) Blocking serum for 10 min at room temperature, rat serum 10% in TBS

Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS (see 3.3.1.4.)

6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Rat anti-Mouse IgG Preparation: dilute 1:1000 in TBS

8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the mouse PAP complex for 30 min at room temperature Preparation: dilute 1:500 in TBS

10) Then as above (see 3.3.1.5.)

3.3.2.10. Lysozyme

Antibody: Rabbit anti-lysozyme (rabbit polyclonal) Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with Protease (see 3.3.1.3.1.) 4) Insert slides in Shandon Racks

5) Blocking serum not applied

Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS/5 % dog serum (see 3.3.1.4.) 6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, swine anti-rabbit IgG Preparation: dilute 1:100 in TBS with 5 % dog serum

8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the PAP from rabbit for 30 min at room temperature Preparation: dilute 1:100 in TBS with 5 % dog serum 10) Then as above (see 3.3.1.5.)

3.3.2.11. CD3

Antibody: Rabbit anti-CD3 (clone pAb)

Provenance: Dako Cytomation GmbH, Hamburg

MATERIALS AND METHODS 53 Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with Protease (see 3.3.1.3.1.) 4) Insert slides in Shandon Racks

5) Blocking serum for 15 min at room temperature, dilute swine serum 1:5 in TBS Incubate primary antibody over night at 4°C in the refrigerator

Dilute the antibody in TBS/20 % SS (see 3.3.1.4.) 6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Goat anti-Rabbit IgG (H+L)

Preparation: 9 µl for 1 ml TBS buffer / 20 % SS 8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

3.3.2.12. CD45R

Antibody: CD45R (clone B220 (Ly 5))

Provenance: Linaris GmbH, Bettingen Stadt Wertheim Sections: Deparaffinized sections from cat (see 3.3.1.1.) Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.):

2) Rinse for 5 min in TBS

3) Pre-processing with citrate (see 3.3.1.3.2.) 4) Insert slides in Shandon Racks

5) Blocking serum for 10 min at room temperature, horse serum Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS with 1 % BSA (see 3.3.1.4.) 6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Rabbit anti-Rat IgG (H+L)

MATERIALS AND METHODS 54 Preparation: 9 µl for 1 ml TBS buffer

8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

3.3.2.13. CD79α

Antibody: Mouse anti-B-cell CD79αcy (clone HM57) Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections from cat (see 3.3.1.1.) Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with citrate (see 3.3.1.3.2.) 4) Insert slides in Shandon Racks

5) Blocking serum for 10 min at room temperature, horse serum Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS with 1 % BSA (see 3.3.1.4.) 6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Horse anti-Mouse IgG (H+L)

Preparation: 9 µl for 1 ml TBS buffer 8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

3.3.2.14. Neuron Specific Enolase (NSE) Antibody: Anti-NSE (monoclonal antibody)

Provenance: “Zymed” Invitrogen GmbH, Karlsruhe Sections: Deparaffinized sections (see 3.3.1.1.)

MATERIALS AND METHODS 55 Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with citrate (see 3.3.1.3.2.) 4) Insert slides in Shandon Racks

5) Blocking serum for 10 min at room temperature, horse serum Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS with 1 % BSA (see 3.3.1.4.) 6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Horse anti-Mouse IgG (H+L)

Preparation: 9 µl for 1 ml TBS buffer 8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

3.3.2.15. Synaptophysin

Antibody: Anti-synaptophysin (clone SY38)

Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with citrate (see 3.3.1.3.2.) 4) Insert slides in Shandon Racks

5) Blocking serum for 10 min at room temperature, horse serum Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS with 1 % BSA (see 3.3.1.4.) 6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Horse anti-Mouse IgG (H+L)

Preparation: 9 µl for 1 ml TBS buffer

MATERIALS AND METHODS 56 8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

3.3.2.16. S100

Antibody: Anti-S100 (rabbit polyclonal)

Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Insert slides in Shandon Racks

4) Blocking serum for 30 min at room temperature, dilute swine serum 1:5 in TBS Incubate primary antibody over night at 4°C in the refrigerator

Dilute the antibody in TBS (see 3.3.1.4.) 5) Rinse 3 x 5 min in TBS buffer

6) Incubate the secondary antibody for 30 min at room temperature, Swine anti-Rabbit IgG Preparation: 9 µl for 1 ml TBS buffer

7) Rinse the sections 3 x 5 min in TBS buffer

8) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

9) Then as above (see 3.3.1.5.)

3.3.2.17. MAC387

Antibody: Anti-Myeloid/Histocyte Antigen (clone MAC387) Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with Protease (see 3.3.1.3.1.)

MATERIALS AND METHODS 57 4) Insert slides in Shandon Racks

5) Blocking serum for 30 min at room temperature, rat serum 1:10 dilute in TBS Incubate primary antibody over night at 4°C in the refrigerator

Dilute the antibody in TBS (see 3.3.1.4.) 6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Swine anti-Rabbit IgG Preparation: 9 µl for 1 ml TBS buffer

8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

3.3.2.18. Smooth muscle actin

Antibody: Mouse anti-smooth muscle actin (clone 1A4) Provenance: Dako Cytomation GmbH, Hamburg Sections: Deparaffinized sections (see 3.3.1.1.)

Procedure:

1) Inhibition of the endogeneous peroxidase (see 3.3.1.2.) 2) Rinse for 5 min in TBS

3) Pre-processing with citrate (see 3.3.1.3.2.) 4) Insert slides in Shandon Racks

5) Blocking serum for 10 min at room temperature, horse serum Incubate primary antibody over night at 4°C in the refrigerator Dilute the antibody in TBS with 1 % SS (see 3.3.1.4.)

6) Rinse 3 x 5 min in TBS buffer

7) Incubate the secondary antibody for 30 min at room temperature, Biotinylated Horse anti-Mouse IgG (H+L)

Preparation: 9 µl for 1 ml TBS buffer 8) Rinse the sections 3 x 5 min in TBS buffer

9) Incubate the ABC complex for 30 min at room temperature Preparation: 9 µl Avidin + 9 µl Biotin for 1 ml TBS buffer Attention! It has to be prepared 30 min before use

10) Then as above (see 3.3.1.5.)

RESULTS 58